New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2897517 =	43 (0.800)	5 (0.100)	4/246	NT	11.3%	coding (836/945 nt)	PP_2551	LysR family transcriptional regulator
	?	NC_002947	2897553 =	38 (0.740)					coding (872/945 nt)	PP_2551	LysR family transcriptional regulator

GCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGC  >  NC_002947/2897405‑2897696                                                                                                                                                     |                                                                                                                                                gCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGtt                                                                                                                                                 >  6:19801/1‑149 (MQ=255) gCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGtt                                                                                                                                                 <  3:251333/149‑1 (MQ=255) ctatccccagccgaataacctcgcttaccgcatagctgctatggcgaacccgtatgcccgccctgcaccccgaactgcgactggcgccacaactcgaatacccgggtacgcaACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGtt                                                                                                                                                 >  5:191959‑M1/113‑149 (MQ=255)   cGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGc                                                                                                                                               <  7:156063/149‑1 (MQ=255)       ccagccgaataacctcgcttaccgcatagctgctatggcgaacccgcatgcccgccctgcaccccgaactgcgactggcgccacaactcgaatacccggttacgcaACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGCTTgcgag                                                                                                                                            <  7:186128‑M1/42‑3 (MQ=255)       ccagacgaataacctcgcttaccgcatagctgctatggcgaacccgcatgcccgccctgcaccccgaactgcgactgtctccacaactcgaatacccggttacgcaACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGc                                                                                                                                               >  8:186128‑M1/107‑145 (MQ=255)         cACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAAcc                                                                                                                                         >  4:184132/1‑149 (MQ=255)          gccgaataacctcgcttaccgcatagctgctatggcgaacccgcatgcccgccctgcaccccgaactgcgactggcgccacaactcgaatacccggttacgcaACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGtt                                                                                                                                                 >  6:105994‑M1/104‑140 (MQ=255)          gccgaataacctcgcttaccgcatagctgctatggcgaacccgcatgcccgccctgcaccccgaactgcgactggcgccacaactcgaatacccggttacgcaACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGtt                                                                                                                                                 <  5:105994‑M1/37‑1 (MQ=255)          aCGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTAGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCg                                                                                                                                        >  3:115505/1‑149 (MQ=255)           cGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCgg                                                                                                                                       <  7:263144/149‑1 (MQ=255)            ggTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCggg                                                                                                                                      >  3:17146/1‑149 (MQ=255)                   gAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGa                                                                                                                               <  1:117548/149‑1 (MQ=255)                   gAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGa                                                                                                                               <  5:19801/149‑1 (MQ=255)                      cacaTCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGtt                                                                                                                            <  4:288265/149‑1 (MQ=255)                             cccGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTAGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGgcgc                                                                                                                     <  4:115505/149‑1 (MQ=255)                              ccGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTCTGgcgc                                                                                                                     >  4:15135/1‑148 (MQ=255)                               cGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCgg                                                                                                                                       >  3:162663/1‑129 (MQ=255)                               cGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCgg                                                                                                                                       <  4:162663/129‑1 (MQ=255)                                 gCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGt                                                                                                                 <  3:184132/149‑1 (MQ=255)                                 gCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGt                                                                                                                 >  5:291561/1‑149 (MQ=255)                                            gTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCggg                                                                                                      <  4:17146/149‑1 (MQ=255)                                            gTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCggg                                                                                                      <  5:72989/149‑1 (MQ=255)                                                gCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTTGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTg                                                                                                   >  3:25436/1‑148 (MQ=255)                                                    gACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCggg                                                                                                      <  3:246241/141‑1 (MQ=255)                                                    gACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCggg                                                                                                      >  4:246241/1‑141 (MQ=255)                                                       ctggcctggcGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTTGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAgggcgg                                                                                           <  4:25436/149‑1 (MQ=255)                                                           cctggcGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCAt                                                                                       <  8:94942/149‑1 (MQ=255)                                                               gcGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCgg                                                                                   >  3:129595/1‑149 (MQ=255)                                                                 gACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGt                                                                                 <  3:15135/149‑1 (MQ=255)                                                                   ccACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCTTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTc                                                                               <  7:46293/149‑1 (MQ=255)                                                                         ggCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCa                                                                           >  2:5915/1‑147 (MQ=255)                                                                               aTCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCt                                                                   <  6:291561/149‑1 (MQ=255)                                                                                tCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTc                                                                               >  4:212163/1‑136 (MQ=255)                                                                                tCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTc                                                                               <  3:212163/136‑1 (MQ=255)                                                                                      acaGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTc                                                                                                                >  6:259023/1‑97 (MQ=255)                                                                                                     gggTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAgggcg                                                                                            >  8:88371/1‑102 (MQ=255)                                                                                                      ggTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTc                                              <  5:51942/147‑1 (MQ=255)                                                                                                        tCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCt                                          <  1:5915/149‑1 (MQ=255)                                                                                                           ctcgcaagcagcggtgctcggccgaggcctgcaggcgctggtTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTgg                                        <  7:186128‑M2/106‑1 (MQ=255)                                                                                                              gcaaccagcggtgctcggccgaggcctgcaggcgctggtTGCGTAACCGGGTATTCGAGTTGTGGAGACAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGTCTgg                                        >  8:186128‑M2/40‑145 (MQ=255)                                                                                                                aaccagcggtgctcggccgaggcctgcaggcgctggtTGCGTACCCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATACGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAg                                  >  5:191959‑M2/38‑149 (MQ=255)                                                                                                                aaccagcggtgctcggccgaggcctgcaggcgctggtTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGc                                           <  5:105994‑M2/103‑1 (MQ=255)                                                                                                                aaccagcggtgctcggccgaggcctgcaggcgctggtTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGc                                           >  6:105994‑M2/38‑140 (MQ=255)                                                                                                                  CCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAg                                  <  5:164001‑M1/147‑1 (MQ=255)                                                                                                                  CCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCACTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAg                                  >  6:164001‑M1/1‑147 (MQ=255)                                                                                                                    AGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGc                              >  4:129595‑M1/1‑149 (MQ=255)                                                                                                                        ccTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGc                                                                                     <  1:155707/90‑1 (MQ=255)                                                                                                                        ccTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGc                                                                                     >  2:155707/1‑90 (MQ=255)                                                                                                                         cTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAg                                                                                                            >  1:311627/1‑66 (MQ=255)                                                                                                                         cTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAg                                                                                                            <  2:311627/66‑1 (MQ=255)                                                                                                                                 cTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCa                 >  3:141901/1‑149 (MQ=255)                                                                                                                                      ccGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATtgtg            <  4:141901/149‑1 (MQ=255)                                                                                                                                        gAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGtt          <  1:37937/149‑1 (MQ=255)                                                                                                                                                ctggtTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGCCTGGGGCATTGTGTTGATTGTGc  >  8:103664‑M2/6‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                GCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCTGGGGATAGGTGCCTAGACTGGGGCATTGTGTTGATTGTGC  >  NC_002947/2897405‑2897696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.