New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2897517 =	43 (0.800)	5 (0.100)	4/246	NT	11.3%	coding (836/945 nt)	PP_2551	LysR family transcriptional regulator
	?	NC_002947	2897553 =	38 (0.740)					coding (872/945 nt)	PP_2551	LysR family transcriptional regulator

TCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCT  >  NC_002947/2897370‑2897656                                                                                                                                                    |                                                                                                                                            tctGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCAc                                                                                                                                            >  8:194524/1‑149 (MQ=255) tctGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCAc                                                                                                                                            >  3:329040/1‑149 (MQ=255)    gcacaatcaacacaatgccccaggctaggcacctatccccagccgaataacctcgcttaccgcatagctgctatggcgaacccgcatgcccgccctgcaccccgaactgcgactggcgccacaactcgaatacccggttacgcaACCAg                                                                                                                                         >  8:103664‑M1/145‑149 (MQ=255)     cgcCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAgc                                                                                                                                        <  8:110615/149‑1 (MQ=255)             tACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAg                                                                                                                                <  4:329040/149‑1 (MQ=255)             tACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAg                                                                                                                                <  6:313241/149‑1 (MQ=255)                  gTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTc                                                                                                                           >  8:156063/1‑149 (MQ=255)                   tGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCg                                                                                                                          >  3:288265/1‑149 (MQ=255)                     aTTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCgg                                                                                                                         <  1:185190/148‑1 (MQ=255)                         ccAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAg                                                                                                                    >  6:72989/1‑149 (MQ=255)                           agcagTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCa                                                                                                                  >  4:251333/1‑149 (MQ=255)                                 cAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTg                                                                                                            <  7:194524/149‑1 (MQ=255)                                    gCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGtt                                                                                                         >  6:19801/1‑149 (MQ=255)                                    gCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGtt                                                                                                         <  3:251333/149‑1 (MQ=255)                                    ctatccccagccgaataacctcgcttaccgcatagctgctatggcgaacccgtatgcccgccctgcaccccgaactgcgactggcgccacaactcgaatacccgggtacgcaACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGtt                                                                                                         >  5:191959‑M1/113‑149 (MQ=255)                                      cGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGc                                                                                                       <  7:156063/149‑1 (MQ=255)                                          ccagccgaataacctcgcttaccgcatagctgctatggcgaacccgcatgcccgccctgcaccccgaactgcgactggcgccacaactcgaatacccggttacgcaACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGCTTgcgag                                                                                                    <  7:186128‑M1/42‑3 (MQ=255)                                          ccagacgaataacctcgcttaccgcatagctgctatggcgaacccgcatgcccgccctgcaccccgaactgcgactgtctccacaactcgaatacccggttacgcaACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGc                                                                                                       >  8:186128‑M1/107‑145 (MQ=255)                                            cACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAAcc                                                                                                 >  4:184132/1‑149 (MQ=255)                                             gccgaataacctcgcttaccgcatagctgctatggcgaacccgcatgcccgccctgcaccccgaactgcgactggcgccacaactcgaatacccggttacgcaACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGtt                                                                                                         >  6:105994‑M1/104‑140 (MQ=255)                                             gccgaataacctcgcttaccgcatagctgctatggcgaacccgcatgcccgccctgcaccccgaactgcgactggcgccacaactcgaatacccggttacgcaACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGtt                                                                                                         <  5:105994‑M1/37‑1 (MQ=255)                                             aCGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTAGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCg                                                                                                >  3:115505/1‑149 (MQ=255)                                              cGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCgg                                                                                               <  7:263144/149‑1 (MQ=255)                                               ggTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCggg                                                                                              >  3:17146/1‑149 (MQ=255)                                                      gAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGa                                                                                       <  5:19801/149‑1 (MQ=255)                                                      gAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGa                                                                                       <  1:117548/149‑1 (MQ=255)                                                         cacaTCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGtt                                                                                    <  4:288265/149‑1 (MQ=255)                                                                cccGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTAGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGgcgc                                                                             <  4:115505/149‑1 (MQ=255)                                                                 ccGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTCTGgcgc                                                                             >  4:15135/1‑148 (MQ=255)                                                                  cGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCgg                                                                                               >  3:162663/1‑129 (MQ=255)                                                                  cGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCgg                                                                                               <  4:162663/129‑1 (MQ=255)                                                                    gCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGt                                                                         <  3:184132/149‑1 (MQ=255)                                                                    gCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGt                                                                         >  5:291561/1‑149 (MQ=255)                                                                               gTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCggg                                                              <  5:72989/149‑1 (MQ=255)                                                                               gTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCggg                                                              <  4:17146/149‑1 (MQ=255)                                                                                   gCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTTGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTg                                                           >  3:25436/1‑148 (MQ=255)                                                                                       gACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCggg                                                              >  4:246241/1‑141 (MQ=255)                                                                                       gACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCggg                                                              <  3:246241/141‑1 (MQ=255)                                                                                          ctggcctggcGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTTGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAgggcgg                                                   <  4:25436/149‑1 (MQ=255)                                                                                              cctggcGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCAt                                               <  8:94942/149‑1 (MQ=255)                                                                                                  gcGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCgg                                           >  3:129595/1‑149 (MQ=255)                                                                                                    gACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGt                                         <  3:15135/149‑1 (MQ=255)                                                                                                      ccACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCTTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTc                                       <  7:46293/149‑1 (MQ=255)                                                                                                            ggCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCa                                   >  2:5915/1‑147 (MQ=255)                                                                                                                  aTCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCt                           <  6:291561/149‑1 (MQ=255)                                                                                                                   tCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTc                                       <  3:212163/136‑1 (MQ=255)                                                                                                                   tCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTc                                       >  4:212163/1‑136 (MQ=255)                                                                                                                         acaGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTc                                                                        >  6:259023/1‑97 (MQ=255)                                                                                                                                        gggTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAgggcg                                                    >  8:88371/1‑102 (MQ=255)                                                                                                                                         ggTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTc      <  5:51942/147‑1 (MQ=255)                                                                                                                                           tCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCt  <  1:5915/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                            TCTGCGCCACGGTACAAGTGATTGCCAGCAGTCAGGCCGTGGCCACGGTCCCCGAGCACATCGCCCGGCAACTGAGCCGTTTGCATGACCTGGCCTGGCGACCACTGGGCTTCATCGACCACAGCCAGCGCTACTGGGTCGTGTGGCACCAGCGCCTGCAGGCCTCGGCCGAGCACCGCTGGTTGCGTAACCGGGTATTCGAGTTGTGGCGCCAGTCGCAGTTCGGGGTGCAGGGCGGGCATGCGGGTTCGCCATAGCAGCTATGCGGTAAGCGAGGTTATTCGGCT  >  NC_002947/2897370‑2897656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.