New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 2900970 = | 51 (0.940) | 5 (0.100) | 5/246 | NT | 9.2% | coding (52/1908 nt) | quiC | 3‑dehydroshikimate dehydratase |
? | NC_002947 | 2901018 = | 51 (1.000) | coding (100/1908 nt) | quiC | 3‑dehydroshikimate dehydratase |
CAGCCTTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2901124‑2900970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgagAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCGCGCCGAA > NC_002947/2901018‑2901164 CAGCCTTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGC > 5:227833/1‑149 CTTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCG < 5:10894/149‑1 CAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGA < 6:160905/147‑1 CTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTG > 6:87721/1‑148 TCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTG > 6:276020/1‑147 CGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCC > 7:98214/1‑89 CGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCC < 8:98214/89‑1 GACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCG < 5:276020/149‑1 CGAGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCGCGCC > 2:262140/1‑148 AGAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCGCGCCGAA < 5:87721/149‑1 CAGCCTTCAAAGTCGCGGAAAGGCTGGAACAAGGTGATGGCAATGCCCAGGTCGGCGCACATCTGGCGCACCTGGCGCGGGCTGCCAGCGTAATAGAGCAGATCGTTCTCGAAGATCTCGACGCCGTCAAAACCGGCGGCGGCGATGGCTTCGAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2901124‑2900970 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cttcgagAACGATCTGCTCTATTACGCTGGCAGCCCGCGCCAGGTGCGCCAGATGTGCGCCGACCTGGGCATTGCCATCACCTTGTTCCAGCCTTTCCGCGACTTTGAAGGCTGCCGCCGTGACCGCCTGCAGAAAAACCTCGACCGCGCCGAA > NC_002947/2901018‑2901164 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |