New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3005856	33 (0.610)	3 (0.060)	3/248	NT	8.4%	coding (2437/3621 nt)	PP_2627	membrane protein
	?	NC_002947	= 3005889	34 (0.660)					coding (2470/3621 nt)	PP_2627	membrane protein

TTCGGACGTCGACCGCGATGCGCTGACCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3005705‑3005856 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaccgTATCCAGCAGCCGTTGCAATGGTGCTGCGGGGCCGGTCAACTGCTCCAGGATCGCGACACCATGGTCCAGATCACGGAAGTCAGCCACCGTAAAAGCGGTCAGGGCGCGCCGCCAGCTGTCAATGTAATCGGCGCTGTAGAGGTTAT  <  NC_002947/3005889‑3005743                                                                                                                                                                                                                                                                                                             TTCGGACGTCGACCGCGATGCGCTGACCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGA                                                                                                                                                        >  2:215573/1‑149   CGGACGTCGACCGCGATGCGCTGACCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGAC                                                                                                                                                       <  1:184744/148‑1    GGACGTCGACCGCGATGCGCTGACCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTTACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACC                                                                                                                                                      <  7:262070/148‑1                            CGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGAC                                                                                                                                                       >  7:87077/1‑123                            CGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGAC                                                                                                                                                       <  8:87077/123‑1                                                    CGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGTATCCAGCAGCCGTTGCAATGGTGCTGCGGGGCCGGTCAACTGCTCCA                                                                                                     <  8:62730/149‑1                                                         ATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGTATCCAGCAGCCGTTGCAATGGTGCTGCGGGGCCGGTCAACT                                                                                                           <  5:28381/138‑1                                                         ATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGTATCCAGCAGCCGTTGCAATGGTGCTGCGGGGCCGGTCAACT                                                                                                           >  6:28381/1‑138                                                                                                                                                      CCGTATCCAGCAGCCGTTGCAATGGTGCTGCGGGGCCGGTCAACTGCTCCAGGATCGCGACACCATGGTCCAGATCACGGAAGTCAGCCACCGTAAAAGCGGTCAGGGCGCGCCGCCAGCTGTCAATGTAATCGGCGCTGTAGAGGTTA   <  2:283755/149‑1                                                                                                                                                       CGTATCCAGCAGCCGTTGCAATGGTGCTGCGGGGCCGGTCAACTGCTCCAGGATCGCGACACCATGGTCCAGATCACGGAAGTCAGCCACCGTAAAAGCGGTCAGGGCGCGCCCCCAGCTGTCAATGTAATCGGCGCTGTAGAGGTTAT  <  2:192276/149‑1                                                                                                                                                                                                                                                                                                             TTCGGACGTCGACCGCGATGCGCTGACCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3005705‑3005856 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgaccgTATCCAGCAGCCGTTGCAATGGTGCTGCGGGGCCGGTCAACTGCTCCAGGATCGCGACACCATGGTCCAGATCACGGAAGTCAGCCACCGTAAAAGCGGTCAGGGCGCGCCGCCAGCTGTCAATGTAATCGGCGCTGTAGAGGTTAT  <  NC_002947/3005889‑3005743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.