New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3005856	33 (0.610)	3 (0.060)	3/248	NT	8.4%	coding (2437/3621 nt)	PP_2627	membrane protein
	?	NC_002947	= 3005889	34 (0.660)					coding (2470/3621 nt)	PP_2627	membrane protein

CGTCGACCGCGATGCGCTGACCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTGGCCATCC  >  NC_002947/3005711‑3006003                                                                                                                                                  |                                                                                                                                                    cGTCGACCGCGATGCGCTGACCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGcc                                                                                                                                                  <  2:279541/149‑1 (MQ=255)     gACCGCGATGCGCTGACCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCgc                                                                                                                                              <  4:136361/149‑1 (MQ=255)         gcgATGCGCTGACCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCgcagca                                                                                                                                          <  7:324310/149‑1 (MQ=255)          cgATGCGCTGACCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCAc                                                                                                                                         <  7:177281/149‑1 (MQ=255)          cgATGCGCTGACCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCAc                                                                                                                                         >  5:334013/1‑149 (MQ=255)             tGCGCTGACCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGAAGTTGACCGGCCCCGCAGCACCAt                                                                                                                                      <  7:49542/149‑1 (MQ=255)                gcTGACCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTg                                                                                                                                    >  5:263953/1‑148 (MQ=255)                    aCCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACg                                                                                                                               <  2:320117/149‑1 (MQ=255)                                 ataACCTCTACAGCGCCGATTACATTGACAGCTGGGGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATAcg                                                                                                                  <  2:192276‑M2/149‑3 (MQ=255)                                  taACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATAcgg                                                                                                                 <  2:283755‑M2/149‑4 (MQ=255)                                      ctctACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAg                                                                                                             <  1:192276/149‑1 (MQ=255)                                      ctctACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAg                                                                                                             >  7:282462/1‑149 (MQ=255)                                      ctctACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGCTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAg                                                                                                             >  1:263801/1‑149 (MQ=255)                                            aGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATaa                                                                                                       >  7:206811/1‑149 (MQ=255)                                              cgcCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGtatccagcagccgttgcaatggtgctgcggggccggtcaactgctcca                                                                                                     <  8:62730‑M1/149‑49 (MQ=255)                                              cgcCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAaca                                                                                                     >  5:315533/1‑149 (MQ=255)                                                   aTTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGtatccagcagccgttgcaatggtgctgcggggccggtcaact                                                                                                           <  5:28381‑M1/138‑43 (MQ=255)                                                   aTTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGtatccagcagccgttgcaatggtgctgcggggccggtcaact                                                                                                           >  6:28381‑M1/1‑96 (MQ=255)                                                        aTTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTgc                                                                                           <  3:139457/149‑1 (MQ=255)                                                          tGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTgcgc                                                                                         >  8:121579/1‑149 (MQ=255)                                                                cTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCcag                                                                                   <  8:206811/149‑1 (MQ=255)                                                                     ggcgCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCt                                                                              <  8:124703/149‑1 (MQ=255)                                                                       cgcgcCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGt                                                                            <  8:282462/149‑1 (MQ=255)                                                                         cgcCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTTACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGATTGCGCCTCCAGCAGCTGTTg                                                                          <  6:334013/149‑1 (MQ=255)                                                                            ccTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAg                                                                       <  2:263801/149‑1 (MQ=255)                                                                            ccTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAg                                                                       >  5:71040/1‑149 (MQ=255)                                                                             cTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGc                                                                      <  6:315533/149‑1 (MQ=255)                                                                             cTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCGGTTGAAg                                                                       >  3:44950/1‑148 (MQ=255)                                                                                   gCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCggg                                                                <  7:121579/149‑1 (MQ=255)                                                                                           ggTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGa                                                             <  6:130960/144‑1 (MQ=255)                                                                                           ggTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGa                                                             >  5:130960/1‑144 (MQ=255)                                                                                               gCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTAc                                                    >  3:201805/1‑149 (MQ=255)                                                                                                    cTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTgc                                               >  1:14497/1‑149 (MQ=255)                                                                                                       ccGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTgcg                                              <  6:263953/147‑1 (MQ=255)                                                                                                       ccGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGcgcg                                            >  3:167075/1‑149 (MQ=255)                                                                                                                        gtgtCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAAccc                           <  6:71040/149‑1 (MQ=255)                                                                                                                            cgcgATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGcgcg                                            <  3:216694/128‑1 (MQ=255)                                                                                                                            cgcgATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGcgcg                                            >  4:216694/1‑128 (MQ=255)                                                                                                                                    tGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATAcggtcaactgctccaggatcgcgacaccatggtccagatcacggaagtcagccaccgtaaaagcggtcagggcgcgccgccagctgtcaatgtaatcggcg               <  8:62730‑M2/149‑102 (MQ=255)                                                                                                                                      gAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTTCGCGTAGCAACCGGAAAACCCGAGCAACAGCaa               <  1:215573/147‑1 (MQ=255)                                                                                                                                          aGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATAcggtcaactgctccaggatcgcgacaccatggtccagatcacggaagtcagccaccgtaaaagcggtcagggcgcgccgccagctgtcaatgtaat                    >  6:28381‑M2/1‑42 (MQ=255)                                                                                                                                          aGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATAcggtcaactgctccaggatcgcgacaccatggtccagatcacggaagtcagccaccgtaaaagcggtcagggcgcgccgccagctgtcaatgtaat                    <  5:28381‑M2/138‑97 (MQ=255)                                                                                                                                              gACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTGGcc      >  2:56976/1‑148 (MQ=255)                                                                                                                                               aCCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTgg        >  7:217693/1‑145 (MQ=255)                                                                                                                                               aCCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTgg        <  8:217693/145‑1 (MQ=255)                                                                                                                                                ccGtatccagcagccgttgcaatggtgctgcggggccggtcaactgctccaggatcgcgacaccatggtccagatcacggaagtcagccaccgtaaaagcggtcagggcgcgccgccagctgtcaatgtaatcggcgctgtagaggtta   <  2:283755‑M1/149‑147 (MQ=255)                                                                                                                                                 cGtatccagcagccgttgcaatggtgctgcggggccggtcaactgctccaggatcgcgacaccatggtccagatcacggaagtcagccaccgtaaaagcggtcagggcgcgcccccagctgtcaatgtaatcggcgctgtagaggttat  <  2:192276‑M1/149‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CGTCGACCGCGATGCGCTGACCGAGCGGCTGTATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTGGCCATCC  >  NC_002947/3005711‑3006003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.