New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3005856	33 (0.610)	3 (0.060)	3/248	NT	8.4%	coding (2437/3621 nt)	PP_2627	membrane protein
	?	NC_002947	= 3005889	34 (0.660)					coding (2470/3621 nt)	PP_2627	membrane protein

ATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTGGCCATCCAGCGGGCGTTTGCAGG  >  NC_002947/3005743‑3006019                                                                                                                                                   |                                                                                                                                   ataACCTCTACAGCGCCGATTACATTGACAGCTGGGGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATAcg                                                                                                                                  <  2:192276‑M2/149‑3 (MQ=255)  taACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATAcgg                                                                                                                                 <  2:283755‑M2/149‑4 (MQ=255)      ctctACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAg                                                                                                                             <  1:192276/149‑1 (MQ=255)      ctctACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAg                                                                                                                             >  7:282462/1‑149 (MQ=255)      ctctACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGCTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAg                                                                                                                             >  1:263801/1‑149 (MQ=255)            aGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATaa                                                                                                                       >  7:206811/1‑149 (MQ=255)              cgcCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAaca                                                                                                                     >  5:315533/1‑149 (MQ=255)                        aTTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTgc                                                                                                           <  3:139457/149‑1 (MQ=255)                          tGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTgcgc                                                                                                         >  8:121579/1‑149 (MQ=255)                                cTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCcag                                                                                                   <  8:206811/149‑1 (MQ=255)                                     ggcgCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCt                                                                                              <  8:124703/149‑1 (MQ=255)                                       cgcgcCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGt                                                                                            <  8:282462/149‑1 (MQ=255)                                         cgcCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTTACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGATTGCGCCTCCAGCAGCTGTTg                                                                                          <  6:334013/149‑1 (MQ=255)                                            ccTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAg                                                                                       >  5:71040/1‑149 (MQ=255)                                            ccTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAg                                                                                       <  2:263801/149‑1 (MQ=255)                                             cTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGc                                                                                      <  6:315533/149‑1 (MQ=255)                                             cTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCGGTTGAAg                                                                                       >  3:44950/1‑148 (MQ=255)                                                   gCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCggg                                                                                <  7:121579/149‑1 (MQ=255)                                                           ggTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGa                                                                             >  5:130960/1‑144 (MQ=255)                                                           ggTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGa                                                                             <  6:130960/144‑1 (MQ=255)                                                               gCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTAc                                                                    >  3:201805/1‑149 (MQ=255)                                                                    cTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTgc                                                               >  1:14497/1‑149 (MQ=255)                                                                       ccGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTgcg                                                              <  6:263953/147‑1 (MQ=255)                                                                       ccGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGcgcg                                                            >  3:167075/1‑149 (MQ=255)                                                                                        gtgtCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAAccc                                           <  6:71040/149‑1 (MQ=255)                                                                                            cgcgATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGcgcg                                                            <  3:216694/128‑1 (MQ=255)                                                                                            cgcgATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGcgcg                                                            >  4:216694/1‑128 (MQ=255)                                                                                                    tGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATAcggtcaactgctccaggatcgcgacaccatggtccagatcacggaagtcagccaccgtaaaagcggtcagggcgcgccgccagctgtcaatgtaatcggcg                               <  8:62730‑M2/149‑102 (MQ=255)                                                                                                      gAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTTCGCGTAGCAACCGGAAAACCCGAGCAACAGCaa                               <  1:215573/147‑1 (MQ=255)                                                                                                          aGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATAcggtcaactgctccaggatcgcgacaccatggtccagatcacggaagtcagccaccgtaaaagcggtcagggcgcgccgccagctgtcaatgtaat                                    >  6:28381‑M2/1‑42 (MQ=255)                                                                                                          aGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATAcggtcaactgctccaggatcgcgacaccatggtccagatcacggaagtcagccaccgtaaaagcggtcagggcgcgccgccagctgtcaatgtaat                                    <  5:28381‑M2/138‑97 (MQ=255)                                                                                                              gACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTGGcc                      >  2:56976/1‑148 (MQ=255)                                                                                                               aCCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTgg                        <  8:217693/145‑1 (MQ=255)                                                                                                               aCCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTgg                        >  7:217693/1‑145 (MQ=255)                                                                                                                          agcaCCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTGGCCATCCAGCGGGCGt         >  4:8480/1‑149 (MQ=255)                                                                                                                           gcaCCATTGCAACGTCTGCTGGATACGGTCAGGGCAAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTGGCCATCCAGCGGGCGtt        <  4:201805/149‑1 (MQ=255)                                                                                                                             aCCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTGGCCATCCAGCGGGCGTTTg      >  1:313054/1‑149 (MQ=255)                                                                                                                               cATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTGGCCATCCAGCGGGCGTTTg      >  7:131585/1‑147 (MQ=255)                                                                                                                               cATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGAAACCGGAAAACCAGAGCAACAGCAACCGATGGCCATCCAGcgcgcgacaac     >  7:213127/1‑143 (MQ=255)                                                                                                                                 ttGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTGGCCATCCAGCGGGCGTTTGCAgg  <  1:56976/149‑1 (MQ=255)                                                                                                                                       cGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAg                              >  8:106514/1‑115 (MQ=255)                                                                                                                                       cGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAg                              <  7:106514/115‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                   ATAACCTCTACAGCGCCGATTACATTGACAGCTGGCGGCGCGCCCTGACCGCTTTTACGGTGGCTGACTTCCGTGATCTGGACCATGGTGTCGCGATCCTGGAGCAGTTGACCGGCCCCGCAGCACCATTGCAACGGCTGCTGGATACGGTCAGGGATAACACCTCGCTTGCGCCTCCAGCAGCTGTTGAAGCATCGGGTGAGCTGAGTACGCTGCGCGTAGCAACCGGAAAACCCGAGCAACAGCAAGCGTTGGCCATCCAGCGGGCGTTTGCAGG  >  NC_002947/3005743‑3006019

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.