| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3123126 = | 34 (0.630) | 3 (0.060) | 3/250 | NT | 9.0% | coding (561/888 nt) | PP_2740 | MerR family transcriptional regulator |
| ? | NC_002947 | 3123164 = | 28 (0.540) | coding (599/888 nt) | PP_2740 | MerR family transcriptional regulator | |||||
CCAAGGCAGGGCTCACCGGTGGCTGCAGCGCGATCACCAGTGCCGCAGGCTGCACCGCTGCACACAGCAGCGGGAGCTCTTCCAGCGGCTGCCCGCAGCCGAGCACGTCGATGCGTTGTCGCTCGCTGCTCAACAGCAGCCCGGCGCACAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3123277‑3123126‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaacGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGCCAAGCGCCTGCGCTCGCTGCAGATGGAAATTGA > NC_002947/3123164‑3123311 CCAAGGCAGGGCTCACCGGTGGCTGCAGCGCGATCACCAGTGCCGCAGGCTGCACCGCTGCACACAGCAGCGGGAGCTCTTCCAGCGGCTGCCCGCAGCCGAGCACGTCGATGCGTTGTCGCTCGCTGCTCAACAGCAGCCCGGCGCA > 3:66312/1‑148CCAAGGCAGGGCTCACCGGTGGCTGCAGCGCGATCACCAGTGCCGCAGGCTGCACCGCTGCACACAGCAGCGGGAGCTCTTCCAGCGGCTGCCCGCAGCCGAGCACGTCGATGCGTTGTCGCTCGCTGCTCAACAGCAGCCCGGCGCA > 6:267478/1‑148 CAAGGCAGGGCTCACCGGTGGCTGCAGCGCGATCACCAGTGCCGCAGGCTGCACCGCTGCACACAGCAGCGGGAGCTCTTCCAGCGGCTGCCCGCAGCCGAGCACGTCGATGCGTTGTCGCTCGCTGCTCAACAGCAGCCCGGCGCAC > 4:206910/1‑148 CAAGGCAGGGCTCACCGGTGGCTGCAGCGCGATCACCAGTGCCGCAGGCTGCACCGCTGCACACAGCAGCGGGAGCTCTTCCAGCGGCTGCCCGCAGCCGAGCACGTCGATGCGTTGTCGCTCGCTGCTCAACAGCAGCCCGGCGCAC > 6:237623/1‑148 GTCGATGCGTTGTCGCTCGCTGCTCAACAGCAGCCCGGCGCACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAG > 3:246292/1‑149 GATGCGTTGTCGCTCGCTGCTCAACAGCAGCCCGGCGCACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCC > 5:216503/1‑149 ATGCGTTGTCGCTCGCTGCTCAACAGCAGCCCGGCGCACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCT > 4:322645/1‑149 ACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGCC > 5:322752/1‑121 ACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGCC < 6:322752/121‑1 CGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGCCAAGCGCCTGCGCTCGCTGCAGATGGAAATTGA < 3:1058/149‑1 CGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGCCAAGCGCCTGCGCTCGCTGCAGATGGAAATTGA < 3:259709/149‑1 CCAAGGCAGGGCTCACCGGTGGCTGCAGCGCGATCACCAGTGCCGCAGGCTGCACCGCTGCACACAGCAGCGGGAGCTCTTCCAGCGGCTGCCCGCAGCCGAGCACGTCGATGCGTTGTCGCTCGCTGCTCAACAGCAGCCCGGCGCACAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3123277‑3123126‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acaacGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGCCAAGCGCCTGCGCTCGCTGCAGATGGAAATTGA > NC_002947/3123164‑3123311 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |