New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3123126 =	34 (0.630)	3 (0.060)	3/250	NT	9.0%	coding (561/888 nt)	PP_2740	MerR family transcriptional regulator
	?	NC_002947	3123164 =	28 (0.540)					coding (599/888 nt)	PP_2740	MerR family transcriptional regulator

CTCGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGCCAAGCGCCTGCGCTCGCTGCAGATGGAAATTGA  >  NC_002947/3123019‑3123311                                                                                                                                                  |                                                                                                                                                    ctcGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACg                                                                                                                                                     >  4:271850/1‑146 (MQ=255) ctcGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACg                                                                                                                                                     <  3:271850/146‑1 (MQ=255) agggctcaccggtggctgcagcgcgatcaccagtgccgcaggctgcaccgctgcacacagcagcgggagctcttccagcggctgcccgcagccgagcacgtcgatgcGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCAt                                                                                                                                                  >  4:322645‑M1/108‑149 (MQ=255)  gggctcaccggtggctgcagcgcgatcaccagtgccgcaggctgcaccgctgcacacagcagcgggagctcttccagcggctgcccgcagccgagcacgtcgatgcGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATc                                                                                                                                                 >  5:216503‑M1/107‑149 (MQ=255)     ctcaccggtggctgcagcgcgatcaccagtgccgcaggctgcaccgctgcacacagcagcgggagctcttccagcggctgcccgcagccgagcacgtcgatgcGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGAc                                                                                                                                              >  3:246292‑M1/104‑149 (MQ=255)         gTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGCCAACGCATCGACGTGc                                                                                                                                          >  4:95648/1‑149 (MQ=255)          ttCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCAt                                                                                                                                                  <  4:123424/140‑1 (MQ=255)          ttCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCAt                                                                                                                                                  >  3:123424/1‑140 (MQ=255)            cTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTc                                                                                                                                        <  3:248811/148‑1 (MQ=255)               gcgcgcCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCgg                                                                                                                                      <  4:98156/147‑1 (MQ=255)                 gcgcCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGc                                                                                                                                  >  6:215164/1‑149 (MQ=255)                       ggCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAg                                                                                                                            >  3:182181/1‑149 (MQ=255)                            ctgctgcGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGGGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCt                                                                                                                       >  5:295883/1‑149 (MQ=255)                                  cgcTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGaa                                                                                                                   <  8:156953/147‑1 (MQ=255)                                    cTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGc                                                                                                               >  3:206910/1‑149 (MQ=255)                                                ccAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCtgt                                                                                                   <  7:291582/149‑1 (MQ=255)                                                  aGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCtgtgt                                                                                                 >  8:118262/1‑149 (MQ=255)                                                   ggTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCtgtgtg                                                                                                >  4:259709/1‑149 (MQ=255)                                                             ccgcGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCa                                                                                      <  7:263836/149‑1 (MQ=255)                                                                      ctgctgGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCgg                                                                              >  4:66312/1‑148 (MQ=255)                                                                            gCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGt                                                                       >  5:267478/1‑149 (MQ=255)                                                                              gggTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGa                                                                     <  8:193934/149‑1 (MQ=255)                                                                               ggTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGAt                                                                    <  5:81143/149‑1 (MQ=255)                                                                                 tACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATcg                                                                  <  2:43470/149‑1 (MQ=255)                                                                                 tACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATcg                                                                  >  5:237623/1‑149 (MQ=255)                                                                                    cGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCgcgc                                                               >  1:158180/1‑149 (MQ=255)                                                                                      aGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGTCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTg                                                             >  4:296374/1‑149 (MQ=255)                                                                                                    gtcgatgcgttgtcgctcgctgctcaacagcagcccggcgcacaacGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAg                                               >  3:246292‑M2/47‑149 (MQ=255)                                                                                                       gatgcgttgtcgctcgctgctcaacagcagcccggcgcacaacGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGccc                                            >  5:216503‑M2/44‑149 (MQ=255)                                                                                                        atgcgttgtcgctcgctgctcaacagcagcccggcgcacaacGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCt                                           >  4:322645‑M2/43‑149 (MQ=255)                                                                                                               GTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTg                                     >  4:206910‑M1/1‑148 (MQ=255)                                                                                                               GTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTg                                     >  6:237623‑M1/1‑148 (MQ=255)                                                                                                                TGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTgg                                    >  3:66312‑M1/1‑148 (MQ=255)                                                                                                                TGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTgg                                    >  6:267478‑M1/1‑148 (MQ=255)                                                                                                                  cgcCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGcc                                  <  6:295883/148‑1 (MQ=255)                                                                                                                   gcCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGcc                                  >  7:2836/1‑147 (MQ=255)                                                                                                                     cGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTg                                                                                        <  1:73108/91‑1 (MQ=255)                                                                                                                     cGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTg                                                                                        >  2:73108/1‑91 (MQ=255)                                                                                                                          tgctgTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGc                                   >  6:41323/1‑139 (MQ=255)                                                                                                                          tgctgTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGc                                   <  5:41323/139‑1 (MQ=255)                                                                                                                          tgctgTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGCCAAGCGCCTg                         >  4:1058/1‑149 (MQ=255)                                                                                                                               ttGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGCCAAGCGCCTGcgct                     <  2:158180/148‑1 (MQ=255)                                                                                                                                         agcgaCAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGCCAAGCGCCTGCGCTCGCTGCAGATg          >  3:28696/1‑149 (MQ=255)                                                                                                                                             acaacGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGcc                                  <  6:322752‑M2/116‑1 (MQ=255)                                                                                                                                             acaacGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGcc                                  >  5:322752‑M2/6‑121 (MQ=255)                                                                                                                                                 cGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGCCAAGCGCCTGCGCTCGCTGCAGATGGAAATTGa  <  3:259709‑M2/148‑1 (MQ=255)                                                                                                                                                 cGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGCCAAGCGCCTGCGCTCGCTGCAGATGGAAATTGa  <  3:1058‑M2/148‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                    CTCGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTGCAGCCACCGGTGAGCCCTGCCTTGGCCAAGCGCCTGCGCTCGCTGCAGATGGAAATTGA  >  NC_002947/3123019‑3123311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.