New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3123126 =	34 (0.630)	3 (0.060)	3/250	NT	9.0%	coding (561/888 nt)	PP_2740	MerR family transcriptional regulator
	?	NC_002947	3123164 =	28 (0.540)					coding (599/888 nt)	PP_2740	MerR family transcriptional regulator

CTTCAGGTACTGCGCCAGGCCAGCGTAGCCAATGGCTGTTTCTCGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTG  >  NC_002947/3122978‑3123252                                                                                                                                                     |                                                                                                                               tcaatttccatctgcagcgagcgcaggcgcttggccaaggcagggctcaccggtggctgcagcgcgatcaccagtgccgcaggctgcaccgctgcacacagcagcgggagctcttccagcggctgcccgcagccgagcacgtcgatgcg                                                                                                                                <  3:1058‑M1/1‑1 (MQ=255) tcaatttccatctgcagcgagcgcaggcgcttggccaaggcagggctcaccggtggctgcagcgcgatcaccagtgccgcaggctgcaccgctgcacacagcagcgggagctcttccagcggctgcccgcagccgagcacgtcgatgcg                                                                                                                                <  3:259709‑M1/1‑1 (MQ=255)  ttCAGGTACTGCGCCAGGCCAGCGTAGCCAATGGCTGTTTCTCGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGgtgt                                                                                                                               <  4:32505/149‑1 (MQ=255)    cAGGTACTGCGCCAGGCCAGCGTAGCCAATGGCTGTTTCTCGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGtgttg                                                                                                                             >  7:156953/1‑149 (MQ=255)     aGGTACTGCGCCAGGCCAGCGTAGCCAATGGCTGTTTCTCGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGtgttgt                                                                                                                            >  5:262174/1‑149 (MQ=255)                 aggccagCGTAGCCAATGGCTGTTTCTCGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGgctgc                                                                                                                >  7:121636/1‑149 (MQ=255)                  ggccagCGTAGCCAATGGCTGTTTCTCGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGgctgct                                                                                                               >  1:43470/1‑149 (MQ=255)                          tAGCCAATGGCTGTTTCTCGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTATCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGagca                                                                                                       <  8:258356/149‑1 (MQ=255)                          tAGCCAATGGCTGTTTCTCGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGagca                                                                                                       <  8:121636/149‑1 (MQ=255)                             ccAATGGCTGTTTCTCGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGagcagc                                                                                                     >  6:81143/1‑148 (MQ=255)                               aaTGGCTGTTTCTCGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCagcgag                                                                                                  >  6:116449/1‑149 (MQ=255)                               aaTGGCTGTTGCTCGATACGTTCTTGCGGGCCCGTCTGCTGCTGCGCTTGCAGATGACCCAGGTCGATGCGCCTCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCagcgag                                                                                                  <  8:321869/149‑1 (MQ=255)                                 ggccaaggcagggctcaccggtggctgcagcgcgatcaccagtgccgcaggctgcaccgctgcacacagcagcgggagctcttccagcggctgcccgcagccgagcacgtcgatgcGTtgt                                                                                                                            <  6:322752‑M1/5‑1 (MQ=255)                                 ggccaaggcagggctcaccggtggctgcagcgcgatcaccagtgccgcaggctgcaccgctgcacacagcagcgggagctcttccagcggctgcccgcagccgagcacgtcgatgcGTtgt                                                                                                                            >  5:322752‑M1/117‑121 (MQ=255)                                       tttCTCGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAAc                                                                                           <  5:116449/148‑1 (MQ=255)                                          ctcGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACg                                                                                          <  3:271850/146‑1 (MQ=255)                                          ctcGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACg                                                                                          >  4:271850/1‑146 (MQ=255)                                          agggctcaccggtggctgcagcgcgatcaccagtgccgcaggctgcaccgctgcacacagcagcgggagctcttccagcggctgcccgcagccgagcacgtcgatgcGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCAt                                                                                       >  4:322645‑M1/108‑149 (MQ=255)                                           gggctcaccggtggctgcagcgcgatcaccagtgccgcaggctgcaccgctgcacacagcagcgggagctcttccagcggctgcccgcagccgagcacgtcgatgcGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATc                                                                                      >  5:216503‑M1/107‑149 (MQ=255)                                              ctcaccggtggctgcagcgcgatcaccagtgccgcaggctgcaccgctgcacacagcagcgggagctcttccagcggctgcccgcagccgagcacgtcgatgcGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGAc                                                                                   >  3:246292‑M1/104‑149 (MQ=255)                                                  gTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGCCAACGCATCGACGTGc                                                                               >  4:95648/1‑149 (MQ=255)                                                   ttCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCAt                                                                                       >  3:123424/1‑140 (MQ=255)                                                   ttCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCAt                                                                                       <  4:123424/140‑1 (MQ=255)                                                     cTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTc                                                                             <  3:248811/148‑1 (MQ=255)                                                        gcgcgcCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCgg                                                                           <  4:98156/147‑1 (MQ=255)                                                          gcgcCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGc                                                                       >  6:215164/1‑149 (MQ=255)                                                                ggCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAg                                                                 >  3:182181/1‑149 (MQ=255)                                                                     ctgctgcGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGgctgct                                                                                                               <  1:17608/98‑1 (MQ=255)                                                                     ctgctgcGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGgctgct                                                                                                               >  2:17608/1‑98 (MQ=255)                                                                     ctgctgcGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGGGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCt                                                            >  5:295883/1‑149 (MQ=255)                                                                           cgcTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGaa                                                        <  8:156953/147‑1 (MQ=255)                                                                             cTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGc                                                    >  3:206910/1‑149 (MQ=255)                                                                                         ccAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCtgt                                        <  7:291582/149‑1 (MQ=255)                                                                                           aGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCtgtgt                                      >  8:118262/1‑149 (MQ=255)                                                                                            ggTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCtgtgtg                                     >  4:259709/1‑149 (MQ=255)                                                                                                      ccgcGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCa                           <  7:263836/149‑1 (MQ=255)                                                                                                               ctgctgGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCgg                   >  4:66312/1‑148 (MQ=255)                                                                                                                     gCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGt            >  5:267478/1‑149 (MQ=255)                                                                                                                       gggTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGa          <  8:193934/149‑1 (MQ=255)                                                                                                                        ggTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGAt         <  5:81143/149‑1 (MQ=255)                                                                                                                          tACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATcg       <  2:43470/149‑1 (MQ=255)                                                                                                                          tACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATcg       >  5:237623/1‑149 (MQ=255)                                                                                                                             cGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCgcgc    >  1:158180/1‑149 (MQ=255)                                                                                                                               aGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGTCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTg  >  4:296374/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                               CTTCAGGTACTGCGCCAGGCCAGCGTAGCCAATGGCTGTTTCTCGATACGTTCTTGCGCGCCCGGCTGCTGCTGCGCTTGCAGATGAACCAGGTCGATGCGCCGCGGGTGCTGCTGGCGGGTACCGAGGGTCAAGCCGAATGCCAGGTGTTGTGCGCCGGGCTGCTGTTGAGCAGCGAGCGACAACGCATCGACGTGCTCGGCTGCGGGCAGCCGCTGGAAGAGCTCCCGCTGCTGTGTGCAGCGGTGCAGCCTGCGGCACTGGTGATCGCGCTG  >  NC_002947/3122978‑3123252

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.