New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3154121	29 (0.540)	4 (0.080)	4/244	NT	12.1%	coding (325/1326 nt)	PP_2770	hypothetical protein
	?	NC_002947	= 3154199	31 (0.610)					coding (403/1326 nt)	PP_2770	hypothetical protein

TACGTCAACGCCCAGGGCGGCGTGAATGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCCACCAATCCGCTGTCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3153968‑3154121 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggtggAATCGGTACGCCCGTGGTTGATGGTGATCAGCGGCAGCTTGTCGGCCGTGGAGCGCTCCAGGGTGGCATACGCGATACCCACCGACAGCGGATTGGTG‑GCGGCAGCCGGTGCGCCGTTGAGCCCACCCTTGAGGCGCTCGTAG  <  NC_002947/3154199‑3154057                                                                                                                                                                                                                                                                                                            TACGTCAACGCCCAGGGCGGCGTGAATGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCCACCAATCCGCTGTC                                                                                                                                                       <  3:314120/149‑1    GTCAACGCCCAGGGCGGCGTGAATGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCCACCAATCCGCTGTC                                                                                                                                                       <  8:64757/146‑1    GTCAACGCCCAGGGCGGCGTGAATGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCCACCAATCCGCTGTC                                                                                                                                                       >  7:64757/1‑146    GTCAACGCCCAGGGCGGCGTGAATGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCCACCAATCCGCTGTC                                                                                                                                                       <  6:354545/146‑1    GTCAACGCCCAGGGCGGCGTGAATGGCGTCAAGCTGACCTGGAGCGAGAGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCCACCAATCCGCTGTC                                                                                                                                                       >  5:354545/1‑146              AGGGCGGCGTGAATGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACAGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCCACCAATCCGCTGTCGGTG                                                                                                                                                   >  6:176899/1‑140              AGGGCGGCGTGAATGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACAGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCCACCAATCCGCTGTCGGTG                                                                                                                                                   <  5:176899/140‑1                                                                                              GAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCCACCAATCCGCTGTCGGTGGAATCGGTACGCCCGTGGTTGATGGTGATCAGCGGCAGCTTGTCGGCCGTGGAGCGCTCCAGGGTGGCATACGCGATACCCACCGACA                                                           <  1:290023/148‑1                                                                                              GAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCCACCAATCCGCTGTCGGTGGAATCGGTACGCCCGTGGTTGATGGTGATCAGCGGCAGCTTGTCGGCCGTGGAGCGCTCCAGGGTGGCATACGCGATACCCACCGA                                                             >  2:290023/1‑146                                                                                               atctCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCCACCAATCCGCTGTCGGTGGAATCGGTACGCCCGTGGTTGATGGTGATCAGCGGCAGCTTGTCGGCCGTGGAGCGCTCCAGGGTGGCATACGCGATACCCACCGACAGC                                                         <  5:337491/145‑1                                                                                                    CTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCCACCAATCCGCTGTCGGTGGAATCGGTACGCCCGTGGTTGATGGTGATCAGCGGCAGCTTGTCGGCCGTGGAGCGCTCCAGGGTGGCATACGCGATACCCACCGACAGC                                                         >  6:337491/1‑144                                                                                                                                                   GTCGGTGGAATCGGTACGCCCGTGGTTGATGGTGATCAGCGGCAGCTTGTCGGCCGTGGAGCGCTCCAGGGTGGCATACGCGATACCCACCGACAGCGGATTGGTGCGCGGCAGCCGGTGCGCCGTTGAGCCCACCCTTGAGGCGCTCG     <  1:66645/149‑1                                                                                                                                                   GTCGGTGGAATCGGTACGCCCGTGGTTGATGGTGATCAGCGGCAGCTTGTCGGCCGTGGAGCGCTCCAGGGTGGCATACGCGATACCCACCGACAGCGGATTGGTG‑GCGGCAGCCGGTGCGCCGTTGAGCCCACCCTTGAGGCGCTCG     >  6:215098/1‑148                                                                                                                                                   GTCGGTGGAATCGGTACGCCCGTGGTTGATGGTGATCAGCGGCAGCTTGTCGGCCGTGGAGCGCTCCAGGGTGGCATACGCGATACCCACCGACAGCGGATTGGTG‑GCGGCAGCCGGTGCGCCGTTGAGCCCACCCTTGAGGCGCTCG     >  6:243336/1‑148                                                                                                                                                    TCGGTGGAATCGGTACGCCCGTGGTTGATGGTGATCAGCGGCAGCTTGTCGGCCGTGGAGCGCTCCAGGGTGGCATACGCGATACCCACCGACAGCGGATTGGTG‑GCGGCAGCCGGTGCGCCGTTGAGCCCACCCTTGAGGCGCTCGTA   <  1:92177/149‑1                                                                                                                                                    TCGGTGGAATCGGTACGCCCGTGGTTGATGGTGATCAGCGGCAGCTTGTCGGCCGTGGAGCGCTCCAGGGTGGCATACGCGATACCCACCGACAGCGGATTGGTG‑GCGGCAGCCGGTGCGCCGTTGAGCCCACCCTTGAGGCGCTCG     >  5:102491/1‑147                                                                                                                                                      GGTGGAATCGGTACGCCCGTGGTTGATGGTGATCAGCGGCAGCTTGTCGGCCGTGGAGCGCTCCAGGGTGGCATACGCGATACCCACCGACAGCGGATTGGTG‑GCGGCAGCCGGTGCGCCGTTGAGCCCACCCTTGAGGCGCTCGTAG  >  4:30499/1‑148                                                                                                                                                                                                                                                                                                            TACGTCAACGCCCAGGGCGGCGTGAATGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCCACCAATCCGCTGTCGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3153968‑3154121 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcggtggAATCGGTACGCCCGTGGTTGATGGTGATCAGCGGCAGCTTGTCGGCCGTGGAGCGCTCCAGGGTGGCATACGCGATACCCACCGACAGCGGATTGGTG‑GCGGCAGCCGGTGCGCCGTTGAGCCCACCCTTGAGGCGCTCGTAG  <  NC_002947/3154199‑3154057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.