New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3154121	29 (0.540)	4 (0.080)	4/244	NT	12.1%	coding (325/1326 nt)	PP_2770	hypothetical protein
	?	NC_002947	= 3154199	31 (0.610)					coding (403/1326 nt)	PP_2770	hypothetical protein

CTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCGTCAACTGGATCGCTCAGCAGGCAGGCGGCGAGCAGGGGCTCAAGGGCAAGAAGATCGTCACGCTCTTTCACGGT  >  NC_002947/3154057‑3154345                                                                                                                                                |                                                                                                                                                   cTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccacc                                                                                                                                               >  4:30499‑M2/1‑143 (MQ=255)  tACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccga                                                                                                                                             <  1:92177‑M2/149‑8 (MQ=255)    cGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCGCACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccgac                                                                                                                                            <  1:66645‑M2/149‑9 (MQ=255)    cGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccgac                                                                                                                                            >  6:215098‑M2/1‑140 (MQ=255)    cGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccgac                                                                                                                                            >  6:243336‑M2/1‑140 (MQ=255)    cGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccga                                                                                                                                             >  5:102491‑M2/1‑140 (MQ=255)       gcgcCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCa                                                                                                                                        <  6:262998/149‑1 (MQ=255)                   tGGGCCCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCt                                                                                                                             >  2:154304/1‑148 (MQ=255)                     ggCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTa                                                                                                                           <  8:12675/148‑1 (MQ=255)                         cAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCt                                                                                                                      >  2:160743/1‑149 (MQ=255)                          aaCGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCtt                                                                                                                     >  1:190118/1‑149 (MQ=255)                          aaCGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCACTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCtt                                                                                                                     >  1:261166/1‑149 (MQ=255)                                gcACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCt                                                                                                               <  4:336638/149‑1 (MQ=255)                                 cACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTg                                                                                                              <  1:160743/149‑1 (MQ=255)                                  aCCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTg                                                                                                              >  6:258347/1‑148 (MQ=255)                                           cgc‑cACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCACTc                                                                                                    >  7:152930/1‑149 (MQ=255)                                                  caATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTAtt                                                                                              >  1:91701/1‑149 (MQ=255)                                                        gCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccgacagcggattggtggcggcagccggtgcgccgttgagcccacccttgaggagat                                                                                        <  5:337491‑M2/149‑61 (MQ=255)                                                        gCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccgacagcggattggtggcggcagccggtgcgccgttgagcccacccttgag                                                                                             >  6:337491‑M2/1‑89 (MQ=255)                                                         cTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAA‑CACGGGCGTACCGATTCCACCGACGGCATCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTa                                                                                      <  2:115569/149‑1 (MQ=255)                                                          tGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccgacagcggattggtggcggcagccggtgcgccgttgagcccacccttgaggcgctc                                                                                       <  1:290023‑M2/148‑62 (MQ=255)                                                            tCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccgacagcggattggtggcggcagccggtgcgccgttgagcccacccttgaggcgctc                                                                                       >  2:290023‑M2/1‑85 (MQ=255)                                                              ggTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCACTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCg                                                                                   <  2:261166/148‑1 (MQ=255)                                                                 gggTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCa                                                                               <  2:66645/149‑1 (MQ=255)                                                                    tATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCg                                                                            >  8:295909/1‑149 (MQ=255)                                                                        gcgTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCGTCaa                                                                        <  2:92177/149‑1 (MQ=255)                                                                         cgTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTAt                                                                                     <  1:257568/135‑1 (MQ=255)                                                                         cgTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTAt                                                                                     >  2:257568/1‑135 (MQ=255)                                                                         cgTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCGTCAAc                                                                       <  7:203145/149‑1 (MQ=255)                                                                         cgTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCGTCAAc                                                                       <  5:258347/149‑1 (MQ=255)                                                                          gTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCGTCAACt                                                                      <  7:295909/149‑1 (MQ=255)                                                                                                        cAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGCTATCGGCCATCGTCAACTGGATCGCTCAGCAGGCAGGCGGCGAGCAgg                                        <  2:190118/149‑1 (MQ=255)                                                                                                               ccGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTc                                                                                                                    >  2:44427/1‑66 (MQ=255)                                                                                                               ccGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTc                                                                                                                    <  1:44427/66‑1 (MQ=255)                                                                                                                          cATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCGTCAACTGGATCGCTCAGGAGGCAGGCGGCGAGCAgggg                                      <  2:338207/133‑1 (MQ=255)                                                                                                                          cATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCGTCAACTGGATCGCTCAGCAGGCAGGCGGCGAGCAGGGGCTCaa                                 >  5:320121/1‑138 (MQ=255)                                                                                                                          cATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCGTCAACTGGATCGCTCAGCAGGCAGGCGGCGAGCAGGGGCTCaa                                 <  6:320121/138‑1 (MQ=255)                                                                                                                          cATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCGTCAACTGCATCGCTCAGCAGGCAGGCGGCGAGCAgggg                                      >  1:338207/1‑133 (MQ=255)                                                                                                                                        gTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATGCCTATTCCGAGGTATCGGCCATCGTCAACTGGATCGCTCAGCAGGCAGGCGGCGAGCAGGGGCTCAAGGGCAAGAAGATc                    >  1:95718/1‑137 (MQ=255)                                                                                                                                        gTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCGTCAACTGGATCGCTCAGCAGGCAGGCGGCGAGCAGGGGCTCAAGGGCAAGAAGATc                    <  2:95718/137‑1 (MQ=255)                                                                                                                                        gTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCGTCAACTGGATCGCTCAGCAGGCAGGCGGCGAGCAGGGGCTCAAGGGCAAGAAGATCGTCACGCTCttt        <  2:91701/149‑1 (MQ=255)                                                                                                                                         tACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCGTCAACTGGATCGCTCAGCAGGCAGGCGGCGAGCAGGGGCTCAAGGGCAAGAAGATCGTCACGCTCttt        >  8:248122/1‑148 (MQ=255)                                                                                                                                            cGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCATCAACTGGATCGCTCAGCAGGCAGGCGGCGAGCAGGGGCTCAAGGGCAAGAAGATCGTCACGCTCTTTCACg    >  5:228075/1‑149 (MQ=255)                                                                                                                                              aTTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCt                                                                                                         >  1:72558/1‑46 (MQ=255)                                                                                                                                              aTTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCt                                                                                                         <  2:72558/46‑1 (MQ=255)                                                                                                                                              aTTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCGTCAACTGGATCGCTCAGCAGGCAGGCGGCGAGCAGGGGCTCAAGGGCAAGAAGATCGTCACGCTCTTTCACGGt  >  1:298160/1‑149 (MQ=255)                                                                                                                                                |                                                                                                                                                   CTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCATCGTCAACTGGATCGCTCAGCAGGCAGGCGGCGAGCAGGGGCTCAAGGGCAAGAAGATCGTCACGCTCTTTCACGGT  >  NC_002947/3154057‑3154345

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.