New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3154121	29 (0.540)	4 (0.080)	4/244	NT	12.1%	coding (325/1326 nt)	PP_2770	hypothetical protein
	?	NC_002947	= 3154199	31 (0.610)					coding (403/1326 nt)	PP_2770	hypothetical protein

AACGCCCAGGGCGGCGTGAATGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCA  >  NC_002947/3153974‑3154268                                                                                                                                                     |                                                                                                                                                    aaCGCCCAGGGCGGCGTGAATGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTggg                                                                                                                                                    >  5:215098/1‑149 (MQ=255)       cAGGGCGGCGTGAATGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATcgc                                                                                                                                              >  3:208460/1‑149 (MQ=255)           gcggcgTGAATGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTAt                                                                                                                                          <  8:13856/149‑1 (MQ=255)           gcggcgTGAATGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTAt                                                                                                                                          <  6:295750/149‑1 (MQ=255)                   aaTGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCAccc                                                                                                                                   <  4:208460/148‑1 (MQ=255)                               cTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGa                                                                                                                               <  4:280927/140‑1 (MQ=255)                               cTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGa                                                                                                                               >  3:280927/1‑140 (MQ=255)                                   ccTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGcc                                                                                                                  >  6:102491/1‑149 (MQ=255)                                    cTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGcc                                                                                                                  >  2:148639/1‑148 (MQ=255)                                           gAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCt                                                                                                          >  5:262998/1‑149 (MQ=255)                                            aGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTg                                                                                                         >  3:30499/1‑149 (MQ=255)                                             gTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGc                                                                                                        >  5:243336/1‑149 (MQ=255)                                                 gagaCTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCt                                                                                                    >  7:12675/1‑149 (MQ=255)                                                             gtcgtGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTAt                                                                                                                                          >  4:300806/1‑99 (MQ=255)                                                             gtcgtGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTAt                                                                                                                                          <  3:300806/99‑1 (MQ=255)                                                                   gagaAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACg                                                                                   <  1:148639/148‑1 (MQ=255)                                                                          gggTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTAcc                                                                           >  8:203145/1‑149 (MQ=255)                                                                             tGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGAt                                                                        >  3:336638/1‑149 (MQ=255)                                                                                    cTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccacc                                                                  >  4:30499‑M2/1‑143 (MQ=255)                                                                                     tACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccga                                                                <  1:92177‑M2/149‑8 (MQ=255)                                                                                       cGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGCGCACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccgac                                                               <  1:66645‑M2/149‑9 (MQ=255)                                                                                       cGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccgac                                                               >  6:243336‑M2/1‑140 (MQ=255)                                                                                       cGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccgac                                                               >  6:215098‑M2/1‑140 (MQ=255)                                                                                       cGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccga                                                                >  5:102491‑M2/1‑140 (MQ=255)                                                                                        gAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGaatcggtacgcccgtggttgatggtgatcagcggcagcttgtcggccgtggagcgctccagggtggcatacgcgatacccaccgaca                                                              <  1:290023‑M1/148‑88 (MQ=255)                                                                                        gAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGaatcggtacgcccgtggttgatggtgatcagcggcagcttgtcggccgtggagcgctccagggtggcatacgcgatacccaccga                                                                >  2:290023‑M1/1‑61 (MQ=255)                                                                                         atctcctcaaGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGaatcggtacgcccgtggttgatggtgatcagcggcagcttgtcggccgtggagcgctccagggtggcatacgcgatacccaccgacagc                                                            <  5:337491‑M1/145‑90 (MQ=255)                                                                                          gcgcCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCa                                                           <  6:262998/149‑1 (MQ=255)                                                                                              cTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGaatcggtacgcccgtggttgatggtgatcagcggcagcttgtcggccgtggagcgctccagggtggcatacgcgatacccaccgacagc                                                            >  6:337491‑M1/1‑55 (MQ=255)                                                                                                      tGGGCCCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCt                                                >  2:154304/1‑148 (MQ=255)                                                                                                        ggCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTa                                              <  8:12675/148‑1 (MQ=255)                                                                                                            cAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCt                                         >  2:160743/1‑149 (MQ=255)                                                                                                             aaCGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCtt                                        >  1:190118/1‑149 (MQ=255)                                                                                                             aaCGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCACTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCtt                                        >  1:261166/1‑149 (MQ=255)                                                                                                                   gcACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCt                                  <  4:336638/149‑1 (MQ=255)                                                                                                                    cACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTg                                 <  1:160743/149‑1 (MQ=255)                                                                                                                     aCCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTg                                 >  6:258347/1‑148 (MQ=255)                                                                                                                              cgc‑cACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCACTc                       >  7:152930/1‑149 (MQ=255)                                                                                                                                     caATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTAtt                 >  1:91701/1‑149 (MQ=255)                                                                                                                                           gCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccgacagcggattggtggcggcagccggtgcgccgttgagcccacccttgaggagat           <  5:337491‑M2/149‑61 (MQ=255)                                                                                                                                           gCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccgacagcggattggtggcggcagccggtgcgccgttgagcccacccttgag                >  6:337491‑M2/1‑89 (MQ=255)                                                                                                                                            cTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAA‑CACGGGCGTACCGATTCCACCGACGGCATCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTa         <  2:115569/149‑1 (MQ=255)                                                                                                                                             tGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccgacagcggattggtggcggcagccggtgcgccgttgagcccacccttgaggcgctc          <  1:290023‑M2/148‑62 (MQ=255)                                                                                                                                              gTCGGTGGaatcggtacgcccgtggttgatggtgatcagcggcagcttgtcggccgtggagcgctccagggtggcatacgcgatacccaccgacagcggattggtggcggcagccggtgcgccgttgagcccacccttgaggcgctcg         >  6:243336‑M1/1‑8 (MQ=255)                                                                                                                                              gTCGGTGGaatcggtacgcccgtggttgatggtgatcagcggcagcttgtcggccgtggagcgctccagggtggcatacgcgatacccaccgacagcggattggtggcggcagccggtgcgccgttgagcccacccttgaggcgctcg         >  6:215098‑M1/1‑8 (MQ=255)                                                                                                                                              gTCGGTGGaatcggtacgcccgtggttgatggtgatcagcggcagcttgtcggccgtggagcgctccagggtggcatacgcgatacccaccgacagcggattggtgcgcggcagccggtgcgccgttgagcccacccttgaggcgctcg        <  1:66645‑M1/149‑142 (MQ=255)                                                                                                                                               tCGGTGGaatcggtacgcccgtggttgatggtgatcagcggcagcttgtcggccgtggagcgctccagggtggcatacgcgatacccaccgacagcggattggtggcggcagccggtgcgccgttgagcccacccttgaggcgctcgta       <  1:92177‑M1/149‑143 (MQ=255)                                                                                                                                               tCGGTGGaatcggtacgcccgtggttgatggtgatcagcggcagcttgtcggccgtggagcgctccagggtggcatacgcgatacccaccgacagcggattggtggcggcagccggtgcgccgttgagcccacccttgaggcgctcg         >  5:102491‑M1/1‑7 (MQ=255)                                                                                                                                               tCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTccaccgacagcggattggtggcggcagccggtgcgccgttgagcccacccttgaggcgctc          >  2:290023‑M2/1‑85 (MQ=255)                                                                                                                                                 ggTGGaatcggtacgcccgtggttgatggtgatcagcggcagcttgtcggccgtggagcgctccagggtggcatacgcgatacccaccgacagcggattggtggcggcagccggtgcgccgttgagcccacccttgaggcgctcgtag      >  4:30499‑M1/1‑5 (MQ=255)                                                                                                                                                 ggTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCACTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCg      <  2:261166/148‑1 (MQ=255)                                                                                                                                                    gggTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCa  <  2:66645/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    AACGCCCAGGGCGGCGTGAATGGCGTCAAGCTGACCTGGAGCGAGTGCGAGACTGAATACGTCGTGGAGAAGGGGGTGGAGTGCTACGAGCGCCTCAAGGGTGGGCTCAACGGCGCACCGGCTGCCGC‑CACCAATCCGCTGTCGGTGGGTATCGCGTATGCCACCCTGGAGCGCTCCACGGCCGACAAGCTGCCGCTGATCACCATCAACCACGGGCGTACCGATTCCACCGACGGCAGCGTATTCCCTTACGTCTTCCCGCTGCAGCTCAATCCCTATTCCGAGGTATCGGCCA  >  NC_002947/3153974‑3154268

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.