New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3221469	33 (0.610)	3 (0.060)	3/244	NT	8.7%	coding (1225/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 3221499	32 (0.630)					coding (1195/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer

TTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGC‑GCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3221315‑3221469 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctcgccCTGAACGCCGCCATCGAAGCGGCACGGGCTGGCGAGCAAGGGCGGGGCTTTGCCGTGGTCGCCGATGAGGTGCGCAACCTGGCCCAGAAAACGACCGCTTCCACCGCGCAGATCCAAGACATCATCCAGCGCCTGCAAAACAGCGC  <  NC_002947/3221499‑3221354                                                                                                                                                                                                                                                                                                                TTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGGATGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTT                                                                                                                                                           >  1:94805/1‑149                                                    AGGC‑GCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGTGACCACGGCAAAGCCCCGCCCTTGCTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGCGAGC                                                                                                               >  7:186353/1‑141                                                    AGGC‑GCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGTGACCACGGCAAAGCCCCGCCCTTGCTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGCGAGC                                                                                                               <  8:186353/141‑1                                                     GGC‑GCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGCGAGCAAGGGCGGG                                                                                                      <  2:94805/149‑1                                                                                                                                                       CTCGCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGCGAGCAAGGGCGGGGCTTTGCCGTGGTCGCCGATGAGGTGCGCAACCTGGCCCAGAAAACGACCGCTTCCACCGCGCAGATCCAAGACATCATCCAGCGCCTGCAAAACAG     <  4:91965/149‑1                                                                                                                                                          GCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGCGAGCAAGGGCGGGGCTTTGCCGTGGTCGCCGATGAGGTGCGCAACCTGGCCCAGAAAACGACCGCTTCCACCGCGCAGATCCAAGACATCATCCAGCGCCTGCAAAACAGCGC  <  6:142917/149‑1                                                                                                                                                          GCCCTGAACGCCGCCATCGAAGCGGCACGGGCTGGCGAGCAAGGGCGGGGCTTTGCCGTGGTCGCCGATGAGGTGCGCAACCTGGCCCAGAAAACGACCGCTTCCACCGCGCAGATCCAAGACATCATCCAGCGCCTGCAAAACAGCGC  >  8:212810/1‑149                                                                                                                                                                                                                                                                                                                TTTTCGCCGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGC‑GCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3221315‑3221469 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctcgccCTGAACGCCGCCATCGAAGCGGCACGGGCTGGCGAGCAAGGGCGGGGCTTTGCCGTGGTCGCCGATGAGGTGCGCAACCTGGCCCAGAAAACGACCGCTTCCACCGCGCAGATCCAAGACATCATCCAGCGCCTGCAAAACAGCGC  <  NC_002947/3221499‑3221354

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.