New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3221469	33 (0.610)	3 (0.060)	3/244	NT	8.7%	coding (1225/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 3221499	32 (0.630)					coding (1195/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer

CGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCC  >  NC_002947/3221322‑3221616                                                                                                                                                    |                                                                                                                                                    cGTTCAGGTTCATCGCGTGCAAGAGTCTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTGTTGGATCTGCGCGGTGGAAGCGGTGGTTTTCTGTGCAAGGTTGCGCACCTCTTGGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCa                                                                                                                                                    <  2:83340/149‑1 (MQ=255)    tCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGACAGcc                                                                                                                                                 >  8:168586/1‑149 (MQ=255)                  tGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGAt                                                                                                                                   >  1:299960/1‑149 (MQ=255)                   gCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGc                                                                                                                                            >  6:113237/1‑139 (MQ=255)                   gCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGc                                                                                                                                            <  5:113237/139‑1 (MQ=255)                   gCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATg                                                                                                                                  >  6:338160/1‑149 (MQ=255)                     aaGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATggc                                                                                                                                >  3:75085/1‑149 (MQ=255)                                 gcgcTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGggc                                                                                                                    <  6:142917‑M2/149‑4 (MQ=255)                                 gcgcTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGggc                                                                                                                    >  8:212810‑M2/1‑146 (MQ=255)                                    cTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGggcgag                                                                                                                 <  4:91965‑M2/149‑7 (MQ=255)                                          tGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGt                                                                                                            <  5:338160/148‑1 (MQ=255)                                             aGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGTGACCACGGCAAAGCCCCGCCCTTGCTCGCCctgaacgccgccatcgaagcggcacgggctggcgagc                                                                                                                >  7:186353‑M1/1‑104 (MQ=255)                                             aGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGTGACCACGGCAAAGCCCCGCCCTTGCTCGCCctgaacgccgccatcgaagcggcacgggctggcgagc                                                                                                                <  8:186353‑M1/141‑38 (MQ=255)                                             aGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGt                                                                                                        <  2:299960/149‑1 (MQ=255)                                              ggCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCctgaacgccgccatcgaagcggcacgggctggcgagcaagggcggg                                                                                                       <  2:94805‑M1/149‑47 (MQ=255)                                                cgcTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTg                                                                                                     >  5:248591/1‑149 (MQ=255)                                                     gatgatGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCgg                                                                                                >  8:219701/1‑149 (MQ=255)                                                              ttGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGAtgctgc                                                                                       >  6:236989/1‑149 (MQ=255)                                                              ttGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGAtgctgc                                                                                       >  5:334755/1‑149 (MQ=255)                                                              ttGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGAtgctgc                                                                                       >  5:16528/1‑149 (MQ=255)                                                                ggATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGAtgctgc                                                                                       <  6:334755/147‑1 (MQ=255)                                                                       cgcgGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCa                                                                                 <  3:117775/146‑1 (MQ=255)                                                                       cgcgGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCAcc                                                                               <  7:262495/148‑1 (MQ=255)                                                                                aGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCg                                                                     <  3:91965/149‑1 (MQ=255)                                                                                 gCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGa                                                                    <  2:126162/149‑1 (MQ=255)                                                                                   ggTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGc                                                                  >  2:168864/1‑149 (MQ=255)                                                                                     tCGTTTTCTGGGCGAGGTTGCGCACCTCATCGGCGACCACGGGAAAGCCCCGCCGTTGCTCGCCAGCCCGTGCCGCTTCCATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGTATCACCGTCAGCACCGAGCCg                                                                <  3:235200/149‑1 (MQ=25)                                                                                       gTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCTGATCACCGTCAGCACCGAGCCGAc                                                              <  5:236989/149‑1 (MQ=255)                                                                                               ggCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTg                                                        <  5:142917/147‑1 (MQ=255)                                                                                                gCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTCCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACCTGCTGGGt                                                     >  2:48353/1‑149 (MQ=255)                                                                                                  cAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGtt                                                    >  6:25331/1‑148 (MQ=255)                                                                                                          gcACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTc                                            >  1:331087/1‑148 (MQ=255)                                                                                                          gcACCGCATCGGCGACCACGGCACAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGGCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTcc                                           <  4:224069/149‑1 (MQ=255)                                                                                                           cACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCg                                                                                      >  7:240532/1‑105 (MQ=255)                                                                                                           cACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCg                                                                                      <  8:240532/105‑1 (MQ=255)                                                                                                                cATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAgttgt                                     >  1:58883/1‑149 (MQ=255)                                                                                                                 aTCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAgttgt                                     <  8:110487/148‑1 (MQ=255)                                                                                                                 aTCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGAATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAgttgt                                     <  4:75085/148‑1 (MQ=255)                                                                                                                     gCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCAt                                >  6:314640/1‑149 (MQ=255)                                                                                                                          cACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCt                           >  1:57060/1‑149 (MQ=255)                                                                                                                                     cccGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGggcgagcaagggcggggctttgccgtggtcgccgatgaggtgcgcaacctggcccagaaaacgaccgcttccaccgcgcagatccaagacatcatccagcgcc                <  2:94805‑M2/149‑104 (MQ=255)                                                                                                                                              gCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGggcgagcaagggcggggctttgccgtggtcaccgatgaggtgcgcaacctggcccagaaaacgaccgcttccaccgcgcagatccaagacatcatccagcgcct               >  7:186353‑M2/1‑37 (MQ=255)                                                                                                                                              gCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGggcgagcaagggcggggctttgccgtggtcaccgatgaggtgcgcaacctggcccagaaaacgaccgcttccaccgcgcagatccaagacatcatccagcgcct               <  8:186353‑M2/141‑105 (MQ=255)                                                                                                                                              gCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCt        <  5:25331/148‑1 (MQ=255)                                                                                                                                               cTCGCCctgaacgccgccatcgaagcggcacgggctggcgagcaagggcggggctttgccgtggtcgccgatgaggtgcgcaacctggcccagaaaacgaccgcttccaccgcgcagatccaagacatcatccagcgcctgcaaaacag      <  4:91965‑M1/149‑144 (MQ=255)                                                                                                                                                  gCCctgaacgccgccatcgaagcggcacgggctggcgagcaagggcggggctttgccgtggtcgccgatgaggtgcgcaacctggcccagaaaacgaccgcttccaccgcgcagatccaagacatcatccagcgcctgcaaaacagcgc   <  6:142917‑M1/149‑147 (MQ=255)                                                                                                                                                  gCCctgaacgccgccatcgaagcggcacgggctggcgagcaagggcggggctttgccgtggtcgccgatgaggtgcgcaacctggcccagaaaacgaccgcttccaccgcgcagatccaagacatcatccagcgcctgcaaaacagcgc   >  8:212810‑M1/1‑3 (MQ=255)                                                                                                                                                  gCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGtt     <  7:219701/147‑1 (MQ=255)                                                                                                                                                   ccAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGCGCACGCTGTTGcc  >  7:162139/1‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                    CGTTCAGGTTCATCGCGTGCAAGACACTGCTGGCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCC  >  NC_002947/3221322‑3221616

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.