New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3221469	33 (0.610)	3 (0.060)	3/244	NT	8.7%	coding (1225/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 3221499	32 (0.630)					coding (1195/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer

GCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTCG  >  NC_002947/3221354‑3221647                                                                                                                                                  |                                                                                                                                                     gcgcTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGggc                                                                                                                                                   >  8:212810‑M2/1‑146 (MQ=255) gcgcTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGggc                                                                                                                                                   <  6:142917‑M2/149‑4 (MQ=255)    cTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGggcgag                                                                                                                                                <  4:91965‑M2/149‑7 (MQ=255)          tGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGt                                                                                                                                           <  5:338160/148‑1 (MQ=255)             aGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGt                                                                                                                                       <  2:299960/149‑1 (MQ=255)                cgcTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTg                                                                                                                                    >  5:248591/1‑149 (MQ=255)                     gatgatGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCgg                                                                                                                               >  8:219701/1‑149 (MQ=255)                              ttGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGAtgctgc                                                                                                                      >  6:236989/1‑149 (MQ=255)                              ttGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGAtgctgc                                                                                                                      >  5:16528/1‑149 (MQ=255)                              ttGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGAtgctgc                                                                                                                      >  5:334755/1‑149 (MQ=255)                                ggATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGAtgctgc                                                                                                                      <  6:334755/147‑1 (MQ=255)                                       cgcgGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCa                                                                                                                <  3:117775/146‑1 (MQ=255)                                       cgcgGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCAcc                                                                                                              <  7:262495/148‑1 (MQ=255)                                                aGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCg                                                                                                    <  3:91965/149‑1 (MQ=255)                                                 gCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGa                                                                                                   <  2:126162/149‑1 (MQ=255)                                                   ggTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGc                                                                                                 >  2:168864/1‑149 (MQ=255)                                                     tCGTTTTCTGGGCGAGGTTGCGCACCTCATCGGCGACCACGGGAAAGCCCCGCCGTTGCTCGCCAGCCCGTGCCGCTTCCATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGTATCACCGTCAGCACCGAGCCg                                                                                               <  3:235200/149‑1 (MQ=25)                                                       gTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCTGATCACCGTCAGCACCGAGCCGAc                                                                                             <  5:236989/149‑1 (MQ=255)                                                               ggCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTg                                                                                       <  5:142917/147‑1 (MQ=255)                                                                gCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTCCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACCTGCTGGGt                                                                                    >  2:48353/1‑149 (MQ=255)                                                                  cAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGtt                                                                                   >  6:25331/1‑148 (MQ=255)                                                                          gcACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTc                                                                           >  1:331087/1‑148 (MQ=255)                                                                          gcACCGCATCGGCGACCACGGCACAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGGCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTcc                                                                          <  4:224069/149‑1 (MQ=255)                                                                           cACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCg                                                                                                                     <  8:240532/105‑1 (MQ=255)                                                                           cACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCg                                                                                                                     >  7:240532/1‑105 (MQ=255)                                                                                cATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAgttgt                                                                    >  1:58883/1‑149 (MQ=255)                                                                                 aTCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAgttgt                                                                    <  8:110487/148‑1 (MQ=255)                                                                                 aTCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGAATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAgttgt                                                                    <  4:75085/148‑1 (MQ=255)                                                                                     gCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCAt                                                               >  6:314640/1‑149 (MQ=255)                                                                                          cACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCt                                                          >  1:57060/1‑149 (MQ=255)                                                                                                     cccGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGggcgagcaagggcggggctttgccgtggtcgccgatgaggtgcgcaacctggcccagaaaacgaccgcttccaccgcgcagatccaagacatcatccagcgcc                                               <  2:94805‑M2/149‑104 (MQ=255)                                                                                                              gCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGggcgagcaagggcggggctttgccgtggtcaccgatgaggtgcgcaacctggcccagaaaacgaccgcttccaccgcgcagatccaagacatcatccagcgcct                                              >  7:186353‑M2/1‑37 (MQ=255)                                                                                                              gCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGggcgagcaagggcggggctttgccgtggtcaccgatgaggtgcgcaacctggcccagaaaacgaccgcttccaccgcgcagatccaagacatcatccagcgcct                                              <  8:186353‑M2/141‑105 (MQ=255)                                                                                                              gCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCt                                       <  5:25331/148‑1 (MQ=255)                                                                                                                  gCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGtt                                    <  7:219701/147‑1 (MQ=255)                                                                                                                   ccAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGCGCACGCTGTTGcc                                 >  7:162139/1‑149 (MQ=255)                                                                                                                               gCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGATGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGAt                     >  1:340410/1‑149 (MQ=255)                                                                                                                                     aTGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCaa               <  2:331087/149‑1 (MQ=255)                                                                                                                                      tGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCAAg              <  2:58883/149‑1 (MQ=255)                                                                                                                                                 aGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTc   >  4:105167/1‑149 (MQ=255)                                                                                                                                                  gggCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTc   >  7:214465/1‑148 (MQ=255)                                                                                                                                                  gggCGAGCAGGGTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTCg  <  6:248591/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                     GCGCTGTTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTTGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTCG  >  NC_002947/3221354‑3221647

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.