New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3394007 =	48 (0.890)	4 (0.080)	4/248	NT	8.2%	coding (400/900 nt)	PP_2997	protein CnmA
	?	NC_002947	3394035 =	44 (0.850)					coding (372/900 nt)	PP_2997	protein CnmA

GCTGACCGCCTGGGAGCCGCAGTTCATCGCCGCCACAGCGCAGCGGCGTTTTCGCCTGTGTGTCAGCGATGCCAGCCACATCACCTTGCTGCCCAGCATCCTCAACCATCTGCGCAGCCATGCGCCGGGCATCCGCCTGGAGGCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3394155‑3394007 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGAT  >  NC_002947/3394035‑3394167                                                                                                                                                                                                                                                                                            GCTGACCGCCTGGGAGCCGCAGTTCATCGCCGCCACAGCGCAGCGGCGTTTTCGCCTGTGTGTCAGCGATGCCAGCCACATCACCTTGCTGCCCAGCATCCTCAACCATCTGCGCAGCCATGCGCCGGGCATCCGCCTGGAGGCGGCGC                                                                                                                                       <  2:18816/149‑1                                                                                                                GCGCAGCCATGCGCCGGGCATCCGCCTGGAGGCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCC                          >  6:36709/1‑147                                                                                                                        ATGCGCCGGGCATCCGCCTGGAGGCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAA                                                              <  5:68643/103‑1                                                                                                                        ATGCGCCGGGCATCCGCCTGGAGGCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAA                                                              >  6:68643/1‑103                                                                                                                                      CGCCTGGAGGCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGAT  <  5:36709/149‑1                                                                                                                                                                                                                                                                                            GCTGACCGCCTGGGAGCCGCAGTTCATCGCCGCCACAGCGCAGCGGCGTTTTCGCCTGTGTGTCAGCGATGCCAGCCACATCACCTTGCTGCCCAGCATCCTCAACCATCTGCGCAGCCATGCGCCGGGCATCCGCCTGGAGGCGGCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3394155‑3394007 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcgcATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGCCGGCGCAGCGAT  >  NC_002947/3394035‑3394167

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.