New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3394007 =	48 (0.890)	4 (0.080)	4/248	NT	8.2%	coding (400/900 nt)	PP_2997	protein CnmA
	?	NC_002947	3394035 =	44 (0.850)					coding (372/900 nt)	PP_2997	protein CnmA

GCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGC  >  NC_002947/3393861‑3394155                                                                                                                                                   |                                                                                                                                                     gcgcGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCcgcg                                                                                                                                                    >  2:96519/1‑149 (MQ=255)           tgcGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAg                                                                                                                                          >  4:98812/1‑149 (MQ=255)           tgcGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAg                                                                                                                                          >  7:269556/1‑149 (MQ=255)             cGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGc                                                                                                                                        <  2:166512/149‑1 (MQ=255)              atcgctgcgccggctgaccgcctgggagccgcagttcatcgccgccacagcgcagcggcgttttcgcctgtgtgtcagcgatgccagccacatcaccttgctgcccagcatcctcaaccatctgcgcagccatGCGCCGCCTCCAGGCg                                                                                                                                       <  5:36709‑M1/16‑1 (MQ=255)               ggTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCg                                                                                                                                       >  5:53930/1‑148 (MQ=255)                gTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGa                                                                                                                                     <  1:255589/149‑1 (MQ=255)                gTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGa                                                                                                                                     >  1:160184/1‑149 (MQ=255)                     tCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGccc                                                                                                                                >  5:256384/1‑149 (MQ=255)                         gCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGGATTGCCGTCGATCCGCGCCGCCTCCAGGAGGAGGCCCGgcg                                                                                                                            >  4:276146/1‑149 (MQ=255)                              cccAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATgg                                                                                                                       <  6:53930/149‑1 (MQ=255)                              cccAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATgg                                                                                                                       <  3:112366/149‑1 (MQ=255)                              cccAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATgg                                                                                                                       >  5:317413/1‑149 (MQ=255)                                      ggagccgcagttcatcgccgccacagcgcagcggcgttttcgcctgtgtgtcagcgatgccagccacatcaccttgctgcccagcatcctcaaccatctgcgcagccatGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTgcgc                                                                                                                 >  6:36709‑M1/110‑147 (MQ=255)                                           gAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATgg                                                                                                           <  8:156908/148‑1 (MQ=255)                                               aGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAg                                                                                                      <  1:96519/149‑1 (MQ=255)                                                       ttGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTgg                                                                                              >  5:292165/1‑149 (MQ=255)                                                        tGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTgg                                                                                              <  8:269556/148‑1 (MQ=255)                                                          aTACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGgca                                                                                           <  3:98812/149‑1 (MQ=255)                                                            aCATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGgcag                                                                                          >  7:315301/1‑148 (MQ=255)                                                             cATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGgcagc                                                                                         >  5:317214/1‑148 (MQ=255)                                                              aTCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGa                                                                                                       <  3:304787/133‑1 (MQ=255)                                                              aTCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCACCAGGCGGATGCCCGGCGCATCGCTGCGCAGATGCTTGa                                                                                                       >  4:304787/1‑133 (MQ=255)                                                               tCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAg                                                                                      <  6:317214/149‑1 (MQ=255)                                                                ccccccGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAgg                                                                                     <  2:160184/149‑1 (MQ=255)                                                                 cccccGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGt                                                                                    >  3:196334/1‑149 (MQ=255)                                                                  ccccGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGt                                                                                    >  4:229649/1‑148 (MQ=255)                                                                   cccGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGa                                                                                  >  2:78557/1‑149 (MQ=255)                                                                    ccGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGAt                                                                                 <  6:256384/149‑1 (MQ=255)                                                                      gCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGAtgt                                                                               <  6:318853/149‑1 (MQ=255)                                                                       cccAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGCCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGAtgtg                                                                              >  5:200976/1‑149 (MQ=255)                                                                         cAACCCGCGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCTGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCTCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGtggc                                                                            <  8:318026/149‑1 (MQ=255)                                                                          ttttcgcctgtgtgtcagcgatgccagccacatcaccttgctgcccagcatcctcaaccatctgcgcagccatGCGCCGCCTCCAGGCGGATGCCCGGCGCAt                                                                                                                         >  6:68643‑M1/74‑103 (MQ=255)                                                                          ttttcgcctgtgtgtcagcgatgccagccacatcaccttgctgcccagcatcctcaaccatctgcgcagccatGCGCCGCCTCCAGGCGGATGCCCGGCGCAt                                                                                                                         <  5:68643‑M1/30‑1 (MQ=255)                                                                            ccAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGtggctgg                                                                         >  8:82588/1‑149 (MQ=255)                                                                               gggCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGgcagc                                                                                         <  4:325740/130‑1 (MQ=255)                                                                               gggCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGgcagc                                                                                         >  3:325740/1‑130 (MQ=255)                                                                                  cACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGc                                                                   >  6:310294/1‑149 (MQ=255)                                                                                     gAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGa                                                                <  2:106735/149‑1 (MQ=255)                                                                                     gAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGa                                                                <  5:310294/149‑1 (MQ=255)                                                                                     gAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGa                                                                <  3:229649/149‑1 (MQ=255)                                                                                          cGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGacacac                                                           <  6:317413/149‑1 (MQ=255)                                                                                                ccAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCg                                                      >  2:158440/1‑148 (MQ=255)                                                                                                  aGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGaaa                                                   <  8:315301/149‑1 (MQ=255)                                                                                                             gCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCcgctgcg                                        >  4:111102/1‑149 (MQ=255)                                                                                                                       aGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTggcggc                              >  8:279735/1‑149 (MQ=255)                                                                                                                                 cGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGc                    >  6:305494/1‑149 (MQ=255)                                                                                                                                 cGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGc                    <  3:111102/149‑1 (MQ=255)                                                                                                                                  ggTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTg                     <  7:279735/147‑1 (MQ=255)                                                                                                                                   gTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCgg                  <  1:78557/149‑1 (MQ=255)                                                                                                                                    tATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGc                 >  8:250158/1‑149 (MQ=255)                                                                                                                                    tATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGc                 <  6:292165/149‑1 (MQ=255)                                                                                                                                           gTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAgg          <  6:200976/149‑1 (MQ=255)                                                                                                                                               aTCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGt      <  7:82588/149‑1 (MQ=255)                                                                                                                                                 ccGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGt      >  4:265531/1‑147 (MQ=255)                                                                                                                                                   GCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGc  <  2:18816‑M1/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     GCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTCGCCCGATTCCAGCGCGCTCTCGGTATTGCCGTCGATCCGCGCCGCCTCCAGGCGGATGCCCGGCGCATGGCTGCGCAGATGGTTGAGGATGCTGGGCAGCAAGGTGATGTGGCTGGCATCGCTGACACACAGGCGAAAACGCCGCTGCGCTGTGGCGGCGATGAACTGCGGCTCCCAGGCGGTCAGC  >  NC_002947/3393861‑3394155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.