| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3657855 = | 38 (0.700) | 4 (0.080) | 4/242 | NT | 11.4% | coding (395/951 nt) | PP_3222 | ABC transporter permease |
| ? | NC_002947 | 3657921 = | 27 (0.540) | coding (329/951 nt) | PP_3222 | ABC transporter permease | |||||
GACCTTGGCCAATCGCTGTCGCTGGGCCGACCGGTCACGGCACTGTTGGCCGAGCGCCTGCCGCAGACCCTGGCCCTGGCCGGTGCCGCCATTGCCCTGTCGCTGTTGGCGGGTGTCGGCCTTGCCTGTCTGACCGCCTACCTGCAATGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3658006‑3657855‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaatggcgGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCTTTGTCCAG > NC_002947/3657921‑3658063 GACCTTGGCCAATCGCTGTCGCTGGGCCGACCGGTCACGGCACTGTTGGCCGAGCGCCTGCCGCAGACCCTGGCCCTGGCCGGTGCCGCCATTGCCCTGTCGCTGTTGGCGGGTGTCGGCCTTGCCTGTCTGACCGCCTACCTGCAATG < 1:341726/149‑1 CGCCATTGCCCTGTCGCTGTTGGCGGGTGTCGGCCTTGCCTGTCTGACCGCCTACCTGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGCGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCC > 7:161936/1‑146 CGCCATTGCCCTGTCGCTGTTGGCGGGTGTCGGCCTTGCCTGTCTGACCGCCTACCTGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGCGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCC < 8:161936/146‑1 GCCATTGCCCTGTCGCTGTTGGCGGGTGTCGGCCTTGCCTGTCTGACCGCCTACCTGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGG > 1:47903/1‑149 TCTGACCGCCTACCTGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTT < 2:47903/148‑1 GCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCTTT > 5:173343/1‑146 GCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCTTT < 6:173343/146‑1 CAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCTTTGTCC > 3:144078/1‑149 ATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCTTTGTCCAG > 6:36502/1‑149 GACCTTGGCCAATCGCTGTCGCTGGGCCGACCGGTCACGGCACTGTTGGCCGAGCGCCTGCCGCAGACCCTGGCCCTGGCCGGTGCCGCCATTGCCCTGTCGCTGTTGGCGGGTGTCGGCCTTGCCTGTCTGACCGCCTACCTGCAATGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3658006‑3657855‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcaatggcgGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCTTTGTCCAG > NC_002947/3657921‑3658063 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |