New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3657855 =	38 (0.700)	4 (0.080)	4/242	NT	11.4%	coding (395/951 nt)	PP_3222	ABC transporter permease
	?	NC_002947	3657921 =	27 (0.540)					coding (329/951 nt)	PP_3222	ABC transporter permease

CAGGCTGGCCAGGCCTTGGCTGCCCGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCC  >  NC_002947/3657713‑3658000                                                                                                                                                |                                                                                                                                                  ctggacaaaggcttgttcgaacagtatttcgacctgctgtggcgggccctgcacggcgaccttggccaatcgctgtcgctgggccgaccggtcacggcactgttggccgagcgcctgccgcagaccctggccctggccggtgcCGCCAt                                                                                                                                              >  6:36502‑M1/144‑149 (MQ=255) cAGGCTGGCCAGGCCTTGGCTGCCCGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCAtt                                                                                                                                             >  1:287026/1‑149 (MQ=255) cAGGCTGGCCAGGCCTTGGCTGCCCGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCAtt                                                                                                                                             >  1:34524/1‑149 (MQ=255) cAGGCTGGCCAGGCCTTGGCTGCCCGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCAtt                                                                                                                                             <  5:9117/149‑1 (MQ=255)  aGGCTGGCCAGGCCTTGGCTGCCCGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCAtt                                                                                                                                             >  5:44102/1‑148 (MQ=255)   ggacaaaggcttgttcgaacagtatttcgacctgctgtggcgggccctgcacggcgaccttggccaatcgctgtcgctgggccgaccggtcacggcactgttggccgagcgcctgccgcagaccctggccctggccggtgcCGCCATTg                                                                                                                                            >  3:144078‑M1/142‑149 (MQ=255)   ggCTGGCCAGGCCTTGGCTGCCCGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGc                                                                                                                                           <  6:44102/149‑1 (MQ=255)      tGGCCAGGCCTTGGCTGCCCGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAgg                                                                                                                                        >  5:279391/1‑149 (MQ=255)       aaaggcttgttcgaacagtatttcgacctgctgtggcgggccctgcacggcgaccttggccaatcgctgtcgctgggccgaccggtcacggcactgttggccgagcgcctgccgcagaccctggccctggccggtgcCGCCATTGc                                                                                                                                           >  5:173343‑M1/138‑146 (MQ=255)       aaaggcttgttcgaacagtatttcgacctgctgtggcgggccctgcacggcgaccttggccaatcgctgtcgctgggccgaccggtcacggcactgttggccgagcgcctgccgcagaccctggccctggccggtgcCGCCATTGc                                                                                                                                           <  6:173343‑M1/9‑1 (MQ=255)        gCCAGGCCTTGGCTGCCCGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCCGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTa                                                                                                                                      >  8:247920/1‑149 (MQ=255)          cAGGCCTTGGCTGCCCGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGGAGTCTTCAGTGGACGCCATTGCAGGTAgg                                                                                                                                    >  5:306690/1‑149 (MQ=255)          cAGGCCTTGGCTGCCCGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAgg                                                                                                                                    >  6:275299/1‑149 (MQ=255)               cTTGGCTGCCCGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGAc                                                                                                                                                   >  3:17116/1‑129 (MQ=255)               cTTGGCTGCCCGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGAc                                                                                                                                                   <  4:17116/129‑1 (MQ=255)                    aacagtatttcgacctgctgtggcgggccctgcacggcgaccttggccaatcgctgtcgctgggccgaccggtcacggcactgttggccgagcgcctgccgcagaccctggccctggccggtgcCGCCATTGCAGGTAGGCGGTCAGa                                                                                                                            <  2:47903‑M1/24‑1 (MQ=255)                     tGCCCGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAg                                                                                                                         >  3:217783/1‑149 (MQ=255)                       cccGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAg                                                                                                                         <  2:287026/147‑1 (MQ=255)                       cccGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAg                                                                                                                         <  1:162637/147‑1 (MQ=255)                             gCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGc                                                                                                                  <  7:81231/148‑1 (MQ=255)                                ggAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGc                                                                                                                  <  7:200720/145‑1 (MQ=255)                                ggAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGc                                                                                                                  >  8:200720/1‑145 (MQ=255)                                 gAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGaca                                                                                                             >  2:195164/1‑149 (MQ=255)                                      cAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGCCACCCGc                                                                                                        >  4:85183/1‑149 (MQ=255)                                           cAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCaa                                                                                                     >  2:65361/1‑147 (MQ=255)                                                cgAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGAc                                                                                              <  2:34524/149‑1 (MQ=255)                                                    ggCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCACGGCCGACACCCGCCAACAGCGACAggg                                                                                          >  2:221802/1‑149 (MQ=255)                                                         acacCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAgg                                                                                                                        <  4:311512/114‑1 (MQ=255)                                                         acacCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAgg                                                                                                                        >  3:311512/1‑114 (MQ=255)                                                            ccttggccaatcgctgtcgctgggccgaccggtcacggcactgttggccgagcgcctgccgcagaccctggccctggccggtgcCGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATggc                                                                                   >  1:47903‑M1/85‑149 (MQ=255)                                                                ggccaatcgctgtcgctgggccgaccggtcacggcgctgttggccgagcgcctgccgcagaccctggccctggccggtgcCGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATggcg                                                                                  <  8:161936‑M1/66‑1 (MQ=255)                                                                ggccaatcgctgtcgctgggccgaccggtcacggcgctgttggccgagcgcctgccgcagaccctggccctggccggtgcCGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATggcg                                                                                  >  7:161936‑M1/81‑146 (MQ=255)                                                                 aTCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCAcc                                                                             <  7:247920/149‑1 (MQ=255)                                                                 aTCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCAcc                                                                             >  3:30161/1‑149 (MQ=255)                                                                  tCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCg                                                                            <  6:306690/149‑1 (MQ=255)                                                                   cagcagcagGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAGTGGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCg                                                                            >  1:250187/1‑149 (MQ=255)                                                                         cagGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACGGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCggccaggg                                                                     >  1:132697/1‑149 (MQ=255)                                                                                   cAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGCACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTg                                                           <  4:217783/149‑1 (MQ=255)                                                                                       acacCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGGCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGc                                                       <  5:275299/149‑1 (MQ=255)                                                                                             gCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGgcgc                                                 <  1:65361/149‑1 (MQ=255)                                                                                                                  ggCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACTGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGAc                             <  2:132697/149‑1 (MQ=255)                                                                                                                  ggCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGAc                             >  7:144668/1‑149 (MQ=255)                                                                                                                     aGGCGCGCCAGTGCAGTCTACAGAGGACGCCATTGCAGCTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGCTCTGCGGCAGGCGCTCGGCCAACAGTGTCGTGccccg                          >  4:274557/1‑147 (MQ=255)                                                                                                                               ggtcAGTCGTCAGTGGACGCCATTGCAGGTCGGCGGTCTTACAGTCAAGGCCGACACCCGCCAACAGCGACAGGTCAATGGCGGCACCTGCCAGGTCCAGGGTCTGCGGATGTCGCTCGGCCAACAGTGCCGTGACCTGTCGGCCcagc                <  6:242382/146‑1 (MQ=255)                                                                                                                                  cAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAACGGCGGCACCGGCCAGGGCAAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGcc                    >  8:306687/1‑142 (MQ=255)                                                                                                                                  cAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAACGGCGGCACCGGCCAGGGCAAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGcc                    <  7:306687/142‑1 (MQ=255)                                                                                                                                    gTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGGCAACAGTGCCGTGACCGGTCGGCCcagcgacag           <  1:221802/149‑1 (MQ=255)                                                                                                                                     tCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCcagcgacagc          <  6:57560/149‑1 (MQ=255)                                                                                                                                           gTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTgg    <  6:279391/149‑1 (MQ=255)                                                                                                                                              gACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGcc  <  4:262417/148‑1 (MQ=255)                                                                                                                                              gACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGcc  >  3:262417/1‑148 (MQ=255)                                                                                                                                               aCGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGcc  >  5:344992/1‑147 (MQ=255)                                                                                                                                                |                                                                                                                                                  CAGGCTGGCCAGGCCTTGGCTGCCCGTGGCCGGAAACCAGCCCAACGCGAAGGCGAACACCTGGATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCC  >  NC_002947/3657713‑3658000

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.