New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3657855 =	38 (0.700)	4 (0.080)	4/242	NT	11.4%	coding (395/951 nt)	PP_3222	ABC transporter permease
	?	NC_002947	3657921 =	27 (0.540)					coding (329/951 nt)	PP_3222	ABC transporter permease

ATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCTTTGTCCAGC  >  NC_002947/3657777‑3658064                                                                                                                                                  |                                                                                                                                                aTCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCAcc                                                                                                                                             <  7:247920/149‑1 (MQ=255) aTCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCAcc                                                                                                                                             >  3:30161/1‑149 (MQ=255)  tCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCg                                                                                                                                            <  6:306690/149‑1 (MQ=255)   cagcagcagGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAGTGGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCg                                                                                                                                            >  1:250187/1‑149 (MQ=255)         cagGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACGGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCggccaggg                                                                                                                                     >  1:132697/1‑149 (MQ=255)                   cAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGCACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTg                                                                                                                           <  4:217783/149‑1 (MQ=255)                       acacCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGGCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGc                                                                                                                       <  5:275299/149‑1 (MQ=255)                             gCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGgcgc                                                                                                                 <  1:65361/149‑1 (MQ=255)                                                  ggCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACTGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGAc                                                                                             <  2:132697/149‑1 (MQ=255)                                                  ggCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGAc                                                                                             >  7:144668/1‑149 (MQ=255)                                                     aGGCGCGCCAGTGCAGTCTACAGAGGACGCCATTGCAGCTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGCTCTGCGGCAGGCGCTCGGCCAACAGTGTCGTGccccg                                                                                          >  4:274557/1‑147 (MQ=255)                                                               ggtcAGTCGTCAGTGGACGCCATTGCAGGTCGGCGGTCTTACAGTCAAGGCCGACACCCGCCAACAGCGACAGGTCAATGGCGGCACCTGCCAGGTCCAGGGTCTGCGGATGTCGCTCGGCCAACAGTGCCGTGACCTGTCGGCCcagc                                                                                <  6:242382/146‑1 (MQ=255)                                                                  cAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAACGGCGGCACCGGCCAGGGCAAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGcc                                                                                    >  8:306687/1‑142 (MQ=255)                                                                  cAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAACGGCGGCACCGGCCAGGGCAAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGcc                                                                                    <  7:306687/142‑1 (MQ=255)                                                                    gTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGGCAACAGTGCCGTGACCGGTCGGCCcagcgacag                                                                           <  1:221802/149‑1 (MQ=255)                                                                     tCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCcagcgacagc                                                                          <  6:57560/149‑1 (MQ=255)                                                                           gTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTgg                                                                    <  6:279391/149‑1 (MQ=255)                                                                              gACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGcc                                                                  <  4:262417/148‑1 (MQ=255)                                                                              gACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGcc                                                                  >  3:262417/1‑148 (MQ=255)                                                                               aCGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGcc                                                                  >  5:344992/1‑147 (MQ=255)                                                                                cgccattgccctgtcgctgttggcgggtgtcggccttgcctgtctgaccgcctacctgcaatggcgGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGCGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGcc                                                                  >  7:161936‑M2/67‑146 (MQ=255)                                                                                cgccattgccctgtcgctgttggcgggtgtcggccttgcctgtctgaccgcctacctgcaatggcgGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGCGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGcc                                                                  <  8:161936‑M2/80‑1 (MQ=255)                                                                                 gccattgccctgtcgctgttggcgggtgtcggccttgcctgtctgaccgcctacctgcaatggcgGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAgg                                                              >  1:47903‑M2/66‑149 (MQ=255)                                                                                   CATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTc                                                            <  1:341726‑M1/149‑1 (MQ=255)                                                                                                   tCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGc                                            <  6:344992/149‑1 (MQ=255)                                                                                                            cAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAgg                                   >  7:21489/1‑149 (MQ=255)                                                                                                                  cGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGGCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGaaa                             <  3:85183/149‑1 (MQ=255)                                                                                                                         cGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGtt                      >  5:350780/1‑149 (MQ=255)                                                                                                                          tctgaccgcctacctgcaatggcgGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGtt                      <  2:47903‑M2/124‑1 (MQ=255)                                                                                                                          gCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGt                                                       >  6:260115/1‑115 (MQ=255)                                                                                                                          gCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGt                                                       <  5:260115/115‑1 (MQ=255)                                                                                                                          gCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTc                     <  6:350780/149‑1 (MQ=255)                                                                                                                           ccAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCTGCCACAGCAGGTCGAAATACTGTTc                     >  6:238427/1‑148 (MQ=255)                                                                                                                            cAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCg                    >  8:191984/1‑148 (MQ=255)                                                                                                                                      aGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGTCGCTCGGCCAACAGTGTCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCttt         <  3:274557/149‑1 (MQ=255)                                                                                                                                      aGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCTGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCttt         <  5:238427/149‑1 (MQ=255)                                                                                                                                       gggCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCTTTg        <  2:250187/149‑1 (MQ=255)                                                                                                                                        ggCAATGGCGGCACCGGCCAAGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCTTTGt       >  8:4175/1‑149 (MQ=255)                                                                                                                                         gcaatggcgGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCttt         <  6:173343‑M2/137‑1 (MQ=255)                                                                                                                                         gcaatggcgGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCttt         >  5:173343‑M2/10‑146 (MQ=255)                                                                                                                                          caatggcgGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCTTTGTcc     >  3:144078‑M2/9‑149 (MQ=255)                                                                                                                                            atggcgGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCTTTGTCCAg   >  6:36502‑M2/7‑149 (MQ=255)                                                                                                                                                  gcACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGTCAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCTTTGTCCAGc  <  4:235361/144‑1 (MQ=255)                                                                                                                                                  gcACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCTTTGTCCAGc  >  3:235361/1‑144 (MQ=255)                                                                                                                                                  |                                                                                                                                                ATCAGCAGCAGGCCCATCCAGAACACCGGCACCGAGAAGCCCAGCGAG‑GGCAGGCGCGCCAGTGCAGTCTTCAGTGGACGCCATTGCAGGTAGGCGGTCAGACAGGCAAGGCCGACACCCGCCAACAGCGACAGGGCAATGGCGGCACCGGCCAGGGCCAGGGTCTGCGGCAGGCGCTCGGCCAACAGTGCCGTGACCGGTCGGCCCAGCGACAGCGATTGGCCAAGGTCGCCGTGCAGGGCCCGCCACAGCAGGTCGAAATACTGTTCGAACAAGCCTTTGTCCAGC  >  NC_002947/3657777‑3658064

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.