| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3779161 | 47 (0.870) | 4 (0.080) | 4/246 | NT | 8.7% | coding (302/417 nt) | nikR | nickel‑responsive regulator |
| ? | NC_002947 | = 3779202 | 40 (0.780) | coding (261/417 nt) | nikR | nickel‑responsive regulator | |||||
CTTGGGCCGATCGCGTCACGAACAAGTGAGGCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3779008‑3779161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgcaTGTGCACCTGGATGCCGGCCACTGCCTGGAGGTCTCGGTGCTGCAGGGCGAAAGCGGCCGAATTGGCGAGTTGTCTCGCCAATTGATGGTTGAGCGCGGCGTGGAACATGGCCAGGTGCAGGTGATCCCGGCTCCGGGGCAGCCGAAG < NC_002947/3779202‑3779055 CTTGGGCCGATCGCGTCACGAACAAGTGAGGCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCTGCCGCTTTCGCC < 1:235547/149‑1 GGGCCGATCGCGTCACGAACAAGTGAGGCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCC < 6:227402/147‑1 GGGCCGATCGCGTCACGAACAAGGGAGGCAACGCCGCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCTTCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCC < 5:228998/147‑1 GGCCGATCGCGTCACGAACAAGTGAGGCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGC < 3:207124/149‑1 GCCGATCGCGTCACGAACAAGTGAGGCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTG > 2:93112/1‑147 TCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCATGTGCACCTGGATGCCGGCCACTGCCTGGAGGT > 7:8571/1‑149 CCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCATGTGCACCTGGATGCCGGCCACTGCCTGGAGGTCTCGGTGCTGCAGGGCG < 8:8571/148‑1 CTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCATGTGCACCTGGATGCCGGCCACTGCCTGGAGGTCTCGGTGCTGCAGG < 7:92291/127‑1 CTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGACGCTTTCGCCCTGCATGTGCACCTGGATGCCGGCCACTGCCTGGAGGTCTCGGTGCTGCAGG > 8:92291/1‑127 CCCTGCATGTGCACCTGGATGCCGGCCACTGCCTGGAGGTCTCGGTGCTGCAGGGCGAAAGCGGCCGAATTGGCGAGTTGTCTCGCCAATTGATGGTTGAGCGCGGCGTGGAACATGGCCAGGTGCAGGTGATCCCTGCTACGGGGCAG > 6:239534/1‑149 ATGTGCACCTGGATGCCGGCCACTGCCTGGAGGTCTCGGTGCTGCAGGGCGAAAGCGGCCGAATTGGCGAGTTGTCTCGCCAATTGATGGTTGAGCGCGGCGTGGAACATGGCCAGGTGCAGGTGATCCCGGCTCCGGGGCAGCCGAAG < 3:175760/149‑1 CTTGGGCCGATCGCGTCACGAACAAGTGAGGCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3779008‑3779161‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgcaTGTGCACCTGGATGCCGGCCACTGCCTGGAGGTCTCGGTGCTGCAGGGCGAAAGCGGCCGAATTGGCGAGTTGTCTCGCCAATTGATGGTTGAGCGCGGCGTGGAACATGGCCAGGTGCAGGTGATCCCGGCTCCGGGGCAGCCGAAG < NC_002947/3779202‑3779055 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |