New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3779161	47 (0.870)	4 (0.080)	4/246	NT	8.7%	coding (302/417 nt)	nikR	nickel‑responsive regulator
	?	NC_002947	= 3779202	40 (0.780)					coding (261/417 nt)	nikR	nickel‑responsive regulator

CTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCACGCAGGCGGCATCGTCCGGCAAGGCTTCA  >  NC_002947/3779055‑3779334                                                                                                                                                    |                                                                                                                                     cTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACAt                                                                                                                                     <  3:175760‑M2/149‑2 (MQ=255)       cTGCCCCGTAGCAGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACAtgcaggg                                                                                                                               >  6:239534‑M2/1‑142 (MQ=255)          ccccGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGt                                                                                                                              <  5:288070/147‑1 (MQ=255)               gAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAAATGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGGGGATCgg                                                                                                                       <  8:297909/149‑1 (MQ=255)                aGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCggg                                                                                                                      <  7:130519/149‑1 (MQ=255)                      gATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGAt                                                                                                                <  2:228498/149‑1 (MQ=255)                       aTCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATc                                                                                                               <  1:93112/149‑1 (MQ=255)                          acctgcacctgGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCgtg                                                                                                            <  4:175760/149‑1 (MQ=255)                            ctgcacctgGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCgtggt                                                                                                          <  4:139183/149‑1 (MQ=255)                               cacctgGCCATGTTCCACGCCTCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGtggtgg                                                                                                        <  8:286814/148‑1 (MQ=255)                                           ttCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCt                                                                                           <  7:67283/149‑1 (MQ=255)                                            tCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTg                                                                                          >  3:288918/1‑149 (MQ=255)                                                 gccgcGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAgg                                                                                               <  6:169160/139‑1 (MQ=255)                                                 gccgcGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAgg                                                                                               >  5:169160/1‑139 (MQ=255)                                                          aaCCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTgg                                                                            >  1:181857/1‑149 (MQ=255)                                                          aaCCATCAATTGGCGAGACAACTCGCCAATTCGGCCACTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTgg                                                                            >  1:231657/1‑149 (MQ=255)                                                                   ttGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTcgc                                                                   >  2:324590/1‑149 (MQ=255)                                                                      gCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCACCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCACGGTCTGGTTGAGCCGTCTGGGCAGTTCGCggg                                                                >  2:73699/1‑149 (MQ=255)                                                                       cGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGt                                                               >  6:146757/1‑149 (MQ=255)                                                                           aCAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCtg                                                           >  7:238101/1‑149 (MQ=255)                                                                             aaCTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCgtg                                                                                                            >  7:184877/1‑98 (MQ=255)                                                                             aaCTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCgtg                                                                                                            <  8:184877/98‑1 (MQ=255)                                                                             aaCTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCtgtg                                                         <  5:192948/149‑1 (MQ=255)                                                                              aCTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTgg                                                        <  1:324590/149‑1 (MQ=255)                                                                                tCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTc                                                      >  4:325615/1‑149 (MQ=255)                                                                                  gCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCg                                                     >  8:134586/1‑148 (MQ=255)                                                                                       ttCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAgg                                               <  2:181857/149‑1 (MQ=255)                                                                                              gCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCgg                                                                 <  8:121630/124‑1 (MQ=255)                                                                                              gCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCgg                                                                 >  7:121630/1‑124 (MQ=255)                                                                                                tttCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTgg                                                                            <  5:265253/111‑1 (MQ=255)                                                                                                tttCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTgg                                                                            >  6:265253/1‑111 (MQ=255)                                                                                                  tCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGaccac                                    >  6:110306/1‑149 (MQ=255)                                                                                                   cGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACAtgcagggcgaaagcggccgaattggcgagttgtctcgccaattgatggttgagcgcggcgtggaacatggccaggtgcaggtgatcccggctccgggg                                    <  8:8571‑M2/148‑99 (MQ=255)                                                                                                   cGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGaccacc                                   >  3:312310/1‑149 (MQ=255)                                                                                                      ccTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACAtgcagggcgaaagcgtccgaattggcgagttgtctcgccaattgatggttgagcgcggcgtggaacatggccaggtgcag                                                      >  8:92291‑M2/1‑47 (MQ=255)                                                                                                      ccTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACAtgcagggcgaaagcggccgaattggcgagttgtctcgccaattgatggttgagcgcggcgtggaacatggccaggtgcag                                                      <  7:92291‑M2/127‑81 (MQ=255)                                                                                                       cTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCa                               <  8:238101/149‑1 (MQ=255)                                                                                                          cagcaCCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCACGc                            <  4:312310/149‑1 (MQ=255)                                                                                                               ccGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCACGCAggcg                       <  3:325615/149‑1 (MQ=255)                                                                                                                  agaCCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCACGCAGGCGGCa                    >  6:108641/1‑149 (MQ=255)                                                                                                                    aCCTCCAGGCAGTGGCCGGCATCCAGGTGCACAtgcagggcgaaagcggccgaattggcgagttgtctcgccaattgatggttgagcgcggcgtggaacatggccaggtgcaggtgatcccggctccggggcagccgaaggtgcgctga                  >  7:8571‑M2/1‑33 (MQ=255)                                                                                                                        ccAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGCGGTCGTACAGGTAACTGACCACCGCCACGCAGGCGGCATCGTcc              <  7:134586/149‑1 (MQ=255)                                                                                                                         cAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCACGCAGGCGGCATCGTcc              <  5:110306/148‑1 (MQ=255)                                                                                                                             cAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCACGCAGGCGGCATCGTCCGGCaa         <  4:288918/149‑1 (MQ=255)                                                                                                                             cAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCACGCAGGCGGCATCGTCCGGCaa         <  2:231657/149‑1 (MQ=255)                                                                                                                                  gCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCACGCAGGCGGCATCGTCCGGCAAGGCtt    <  5:146757/149‑1 (MQ=255)                                                                                                                                    cGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCACGCAGGCGGCATCGTCCGGCAAGGCTTCa  <  5:108641/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                     CTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCACGCAGGCGGCATCGTCCGGCAAGGCTTCA  >  NC_002947/3779055‑3779334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.