New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3779161	47 (0.870)	4 (0.080)	4/246	NT	8.7%	coding (302/417 nt)	nikR	nickel‑responsive regulator
	?	NC_002947	= 3779202	40 (0.780)					coding (261/417 nt)	nikR	nickel‑responsive regulator

GCGTCACGAACAAGTGAGGCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCACGCA  >  NC_002947/3779020‑3779309                                                                                                                                              |                                                                                                                                                     gcgTCACGAACAAGTGAGGCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCAcc                                                                                                                                                 >  1:228498/1‑147 (MQ=255)      aCGAACAAGTGAGGCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCt                                                                                                                                          >  6:146322/1‑149 (MQ=255)       cGAACAAGTGAGGCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTCCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTc                                                                                                                                         <  8:169346/149‑1 (MQ=255)        gAACAAGTGAGGCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTc                                                                                                                                         >  7:166466/1‑148 (MQ=255)              gTGAGGCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAg                                                                                                                                  >  8:95978/1‑149 (MQ=255)                 aGGCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTgg                                                                                                                               >  8:67283/1‑149 (MQ=255)                   gCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGcc                                                                                                                             >  8:130519/1‑149 (MQ=255)                   gCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGcc                                                                                                                             >  6:288070/1‑149 (MQ=255)                        gCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCAt                                                                                                                        >  6:192948/1‑149 (MQ=255)                          cTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATcc                                                                                                                      <  8:166466/149‑1 (MQ=255)                          cTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCAGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATc                                                                                                                       >  5:353790/1‑148 (MQ=255)                           tCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAtgtgcacctggatgccggccactgcctggaggt                                                                                                                     >  7:8571‑M1/1‑116 (MQ=255)                             aGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAgg                                                                                                                   <  5:146322/149‑1 (MQ=255)                              gcgcACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGt                                                                                                                  <  6:353790/149‑1 (MQ=255)                              gcgcACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGt                                                                                                                  <  5:222494/149‑1 (MQ=255)                              gcgcACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGt                                                                                                                  <  7:95978/149‑1 (MQ=255)                                    cTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACAt                                                                                                            <  3:175760‑M2/149‑2 (MQ=255)                                          cTGCCCCGTAGCAGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACAtgcaggg                                                                                                      >  6:239534‑M2/1‑142 (MQ=255)                                             ccccGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAtgtgcacctggatgccggccactgcctggaggtctcggtgctgcagggcg                                                                                                    <  8:8571‑M1/148‑51 (MQ=255)                                             ccccGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGt                                                                                                     <  5:288070/147‑1 (MQ=255)                                                  gAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAAATGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGGGGATCgg                                                                                              <  8:297909/149‑1 (MQ=255)                                                   aGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCggg                                                                                             <  7:130519/149‑1 (MQ=255)                                                         gATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGAt                                                                                       <  2:228498/149‑1 (MQ=255)                                                          aTCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATc                                                                                      <  1:93112/149‑1 (MQ=255)                                                             acctgcacctgGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCgtg                                                                                   <  4:175760/149‑1 (MQ=255)                                                               ctgcacctgGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAtgtgcacctggatgccggccactgcctggaggtctcggtgctgcagg                                                                                                       <  7:92291‑M1/127‑48 (MQ=255)                                                               ctgcacctgGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCgtggt                                                                                 <  4:139183/149‑1 (MQ=255)                                                               ctgcacctgGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGACGCTTTCGCCCTGCAtgtgcacctggatgccggccactgcctggaggtctcggtgctgcagg                                                                                                       >  8:92291‑M1/1‑80 (MQ=255)                                                                  cacctgGCCATGTTCCACGCCTCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGtggtgg                                                                               <  8:286814/148‑1 (MQ=255)                                                                              ttCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCt                                                                  <  7:67283/149‑1 (MQ=255)                                                                               tCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTg                                                                 >  3:288918/1‑149 (MQ=255)                                                                                    gccgcGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAgg                                                                      >  5:169160/1‑139 (MQ=255)                                                                                    gccgcGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAgg                                                                      <  6:169160/139‑1 (MQ=255)                                                                                             aaCCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTgg                                                   >  1:181857/1‑149 (MQ=255)                                                                                             aaCCATCAATTGGCGAGACAACTCGCCAATTCGGCCACTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTgg                                                   >  1:231657/1‑149 (MQ=255)                                                                                              aCCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAg                                                                                                                                  >  6:279941/1‑69 (MQ=255)                                                                                              aCCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAg                                                                                                                                  <  5:279941/69‑1 (MQ=255)                                                                                                      ttGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTcgc                                          >  2:324590/1‑149 (MQ=255)                                                                                                         gCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCACCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCACGGTCTGGTTGAGCCGTCTGGGCAGTTCGCggg                                       >  2:73699/1‑149 (MQ=255)                                                                                                          cGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGt                                      >  6:146757/1‑149 (MQ=255)                                                                                                              aCAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCtg                                  >  7:238101/1‑149 (MQ=255)                                                                                                                aaCTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCgtg                                                                                   >  7:184877/1‑98 (MQ=255)                                                                                                                aaCTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCgtg                                                                                   <  8:184877/98‑1 (MQ=255)                                                                                                                aaCTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCtgtg                                <  5:192948/149‑1 (MQ=255)                                                                                                                 aCTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTgg                               <  1:324590/149‑1 (MQ=255)                                                                                                                   tCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTc                             >  4:325615/1‑149 (MQ=255)                                                                                                                     gCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCg                            >  8:134586/1‑148 (MQ=255)                                                                                                                          ttCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAgg                      <  2:181857/149‑1 (MQ=255)                                                                                                                                 gCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCgg                                        <  8:121630/124‑1 (MQ=255)                                                                                                                                 gCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCgg                                        >  7:121630/1‑124 (MQ=255)                                                                                                                                   tttCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTgg                                                   <  5:265253/111‑1 (MQ=255)                                                                                                                                   tttCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTgg                                                   >  6:265253/1‑111 (MQ=255)                                                                                                                                     tCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGaccac           >  6:110306/1‑149 (MQ=255)                                                                                                                                      cGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACAtgcagggcgaaagcggccgaattggcgagttgtctcgccaattgatggttgagcgcggcgtggaacatggccaggtgcaggtgatcccggctccgggg           <  8:8571‑M2/148‑99 (MQ=255)                                                                                                                                      cGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGaccacc          >  3:312310/1‑149 (MQ=255)                                                                                                                                        cccTGCAtgtgcacctggatgccggccactgcctggaggtctcggtgctgcagggcgaaagcggccgaattggcgagttgtctcgccaattgatggttgagcgcggcgtggaacatggccaggtgcaggtgatccctgctacggggcag        >  6:239534‑M1/1‑7 (MQ=255)                                                                                                                                         ccTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACAtgcagggcgaaagcgtccgaattggcgagttgtctcgccaattgatggttgagcgcggcgtggaacatggccaggtgcag                             >  8:92291‑M2/1‑47 (MQ=255)                                                                                                                                         ccTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACAtgcagggcgaaagcggccgaattggcgagttgtctcgccaattgatggttgagcgcggcgtggaacatggccaggtgcag                             <  7:92291‑M2/127‑81 (MQ=255)                                                                                                                                          cTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCa      <  8:238101/149‑1 (MQ=255)                                                                                                                                             cagcaCCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCACGc   <  4:312310/149‑1 (MQ=255)                                                                                                                                              atgtgcacctggatgccggccactgcctggaggtctcggtgctgcagggcgaaagcggccgaattggcgagttgtctcgccaattgatggttgagcgcggcgtggaacatggccaggtgcaggtgatcccggctccggggcagccgaag  <  3:175760‑M1/149‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                     GCGTCACGAACAAGTGAGGCAACGCCTCAGCGCACCTTCGGCTGCCCCGGAGCCGGGATCACCTGCACCTGGCCATGTTCCACGCCGCGCTCAACCATCAATTGGCGAGACAACTCGCCAATTCGGCCGCTTTCGCCCTGCAGCACCGAGACCTCCAGGCAGTGGCCGGCATCCAGGTGCACATGCAGGGTGGATCGGGTCAGATCGTGGTGGGCGTGCAGGGTCTGGTTGAGCCGTCTGGGCAGTTCGCGGGTGCTGTGGTCGTACAGGTAACTGACCACCGCCACGCA  >  NC_002947/3779020‑3779309

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.