New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 4000753 = | 52 (0.960) | 3 (0.060) | 3/244 | NT | 6.6% | coding (435/1365 nt) | dmoA‑II | dimethyl‑sulfide monooxygenase |
? | NC_002947 | 4000806 = | 36 (0.710) | coding (488/1365 nt) | dmoA‑II | dimethyl‑sulfide monooxygenase |
CCCGCGAGGGTTCGATATAGCGCCCGCTTTCACGCTCCAGCAGCACGGCGTCGTCGTCCCAGCTTTTCTCCCACAGCTTGTACAGCACCTGCAGGTATTCCTCGGCCAGGTCGTAGCGTTGGTCGTGGCCCCGTTGACGCGCCAGGCCGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4000904‑4000753 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgaggAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTCCAGGTGCCCGGCA > NC_002947/4000806‑4000949 CCCGCGAGGGTTCGATATAGCGCCCGCTTTCACGCTCCAGCAGCACGGCGTCGTCGTCCCAGCTTTTCTCCCACAGCTTGTACAGCACCTGCAGGTATTCCTCGGCCAGGTCGTAGCGTTGGTCGTGGCCCCGTTGACGCGCCAGGCC > 1:240333/1‑148 TTCGATATAGCGCCCGCTTTCACGCTCCAGCAGCACGGCGTCGTCGTCCCAGCTTTTCTCCCACAGCTTGTACAGCACCTGCAGGTATTCCTCGGCCAGGTCGTAGCGTTGGTCGTGGCCCCGTTGACGCGCCAGGCCGA < 7:26917/140‑1 TTCGATATAGCGCCCGCTTTCACGCTCCAGCAGCACGGCGTCGTCGTCCCAGCTTTTCTCCCACAGCTTGTACAGCACCTGCAGGTATTCCTCGGCCAGGTCGTAGCGTTGGTCGTGGCCCCGTTGACGCGCCAGGCCGA > 8:26917/1‑140 AGCAGCACGGCGTCGTCGTCCCAGCTTTTCTCCCACAGCTTGTACAGCACCTGCAGGTATTCCTCGGCCAGGTCGTAGCGTTGGTCGTGGCCCCGTTGACGCGCCAGGCCG > 1:53389/1‑111 AGCAGCACGGCGTCGTCGTCCCAGCTTTTCTCCCACAGCTTGTACAGCACCTGCAGGTATTCCTCGGCCAGGTCGTAGCGTTGGTCGTGGCCCCGTTGACGCGCCAGGCCG < 2:53389/111‑1 CTCGGCCAGGTCGTAGCGTTGGTCGTGGCCCCGTTGACGCGCCAGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCG > 3:120923/1‑149 CGGCCAGGTCGTAGCGTTGGTCGTGGCCCCGTTGACGCGCCAGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGG > 6:293238/1‑149 GTCGTAGCGTTGGTCGTGGCCCCGTTGACGCGCCAGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCC < 5:293238/149‑1 CGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTCCAGGTGCCCGGCA > 8:268462/1‑149 CCCGCGAGGGTTCGATATAGCGCCCGCTTTCACGCTCCAGCAGCACGGCGTCGTCGTCCCAGCTTTTCTCCCACAGCTTGTACAGCACCTGCAGGTATTCCTCGGCCAGGTCGTAGCGTTGGTCGTGGCCCCGTTGACGCGCCAGGCCGAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4000904‑4000753 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgaggAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTCCAGGTGCCCGGCA > NC_002947/4000806‑4000949 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |