New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4000753 =	52 (0.960)	3 (0.060)	3/244	NT	6.6%	coding (435/1365 nt)	dmoA‑II	dimethyl‑sulfide monooxygenase
	?	NC_002947	4000806 =	36 (0.710)					coding (488/1365 nt)	dmoA‑II	dimethyl‑sulfide monooxygenase

CTTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTCCAGGTGCCCGGCA  >  NC_002947/4000660‑4000949                                                                                                                                                    |                                                                                                                                                ctTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGTAACATCGTCACC‑GGTTAGCTGGACCGCGCGGCGCGCAACCTCGGACTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAAt                                                                                                                                               <  1:254602/149‑1 (MQ=37)    cGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATAc                                                                                                                                             <  2:49637/148‑1 (MQ=255)      cccGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTg                                                                                                                                          >  7:123113/1‑149 (MQ=255)       ccGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTg                                                                                                                                          >  7:268319/1‑148 (MQ=255)            gcATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTg                                                                                                                                    >  4:304376/1‑149 (MQ=255)              aTGTCCACGCTCGACCACCTGAGCAATGGCCTGGTCGGCTGGAACTTCGTCACC‑TGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCt                                                                                                                                  <  6:8446/149‑1 (MQ=255)              aTGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCt                                                                                                                                  <  8:268319/149‑1 (MQ=255)                       cTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCt                                                                                                                         <  7:106008/149‑1 (MQ=255)                        tCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCtg                                                                                                                        >  2:216648/1‑149 (MQ=255)                          gACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCtgtg                                                                                                                      <  8:123113/149‑1 (MQ=255)                           accaccTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCACAACCTCGGCCTGGCGCGTCAACGGGGCCACGAGCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTgg                                                                                                                     >  1:321565/1‑149 (MQ=255)                            ccaccTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTgg                                                                                                                     >  8:300941/1‑148 (MQ=255)                                cTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGgaga                                                                                                                 >  2:240333/1‑148 (MQ=255)                                  gAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGATCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGaa                                                                                                                >  6:191569/1‑147 (MQ=255)                                     cAATGGCCGGGTCGGCTGGAACATCGTCACCGGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGc                                                                                                            >  1:221098/1‑149 (MQ=255)                                       aTGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTgg                                                                                                         <  1:11691/149‑1 (MQ=255)                                        tGGCCGGGTCGGCTCGAACATCGTCACC‑GGGTATCTGGACAGCGCTCCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACAAGCAGGTGCTGTACAACCAGTGGGAGCAAAGCTgcg                                                                                                        >  5:199480/1‑147 (MQ=255)                                          gCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGATCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGga                                                                                                       <  5:191569/148‑1 (MQ=255)                                          gCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGga                                                                                                       <  3:154431/148‑1 (MQ=255)                                                  ggCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGaa                                                                                                                                                >  6:23775/1‑99 (MQ=255)                                                  ggCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGaa                                                                                                                                                <  5:23775/99‑1 (MQ=255)                                                      ggAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCtgtg                                                                                                                      <  6:270228/121‑1 (MQ=255)                                                      ggAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCtgtg                                                                                                                      >  5:270228/1‑121 (MQ=255)                                                          cATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGtgctgc                                                                                      <  1:216648/149‑1 (MQ=255)                                                                cACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGgacgacgac                                                                                                <  6:333403/133‑1 (MQ=255)                                                                cACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGgacgacgac                                                                                                >  5:333403/1‑133 (MQ=255)                                                                     gggTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGa                                                                            <  7:300941/149‑1 (MQ=255)                                                                       gTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGaaa                                                                          <  3:126548/149‑1 (MQ=255)                                                                         aTCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGCCCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGc                                                                        >  4:126640/1‑149 (MQ=255)                                                                             ggACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGaa                                                                           >  6:284002/1‑142 (MQ=255)                                                                             ggACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGaa                                                                           <  5:284002/142‑1 (MQ=255)                                                                              gACAGCGCTGCGCACAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCgg                                                                      <  2:321565/146‑1 (MQ=255)                                                                                     cTGCGCGCAACCTCGGCCTGGCGGGTCAACTGTGCCACGACCAACGCTTCGCGCTGGCCGAGGAATACCTGGAGGTGCTGTACAAGCTGTGGGAGAAAAGGTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATc                                                            <  6:199480/149‑1 (MQ=255)                                                                                      tGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATc                                                            >  7:61066/1‑148 (MQ=255)                                                                                         gcgcAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAAc                                                        <  3:304376/149‑1 (MQ=255)                                                                                                ctcggccaggtcgtagcgttggtcgtggccccgttgacgcgccaggccgaggAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTcgcg                                                 >  3:120923‑M2/53‑149 (MQ=255)                                                                                                 TCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGaa                                                         >  8:26917‑M1/1‑140 (MQ=255)                                                                                                 TCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGaa                                                         <  7:26917‑M1/140‑1 (MQ=255)                                                                                                  cggccaggtcgtagcgttggtcgtggccccgttgacgcgccaggccgaggAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCggg                                               >  6:293238‑M2/51‑149 (MQ=255)                                                                                                  CGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTgctgct                                                                                     >  1:53389‑M1/1‑111 (MQ=255)                                                                                                  CGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTgctgct                                                                                     <  2:53389‑M1/111‑1 (MQ=255)                                                                                                   GGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCggg                                               >  1:240333‑M1/1‑148 (MQ=255)                                                                                                       tGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGATTACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTacac                                          >  3:187236/1‑149 (MQ=255)                                                                                                         gtcgtagcgttggtcgtggccccgttgacgcgccaggccgaggAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACAccc                                        <  5:293238‑M2/106‑1 (MQ=255)                                                                                                                           gACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGa                      <  8:61066/149‑1 (MQ=255)                                                                                                                               aaCGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGt                                              <  2:24665/121‑1 (MQ=255)                                                                                                                               aaCGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGt                                              >  1:24665/1‑121 (MQ=255)                                                                                                                               aaCGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCAc                  <  1:136458/149‑1 (MQ=255)                                                                                                                                         ccTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCAtgt                            <  1:123442/129‑1 (MQ=255)                                                                                                                                         ccTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCAtgt                            >  2:123442/1‑129 (MQ=255)                                                                                                                                         ccTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTCCAGGTGc        >  8:69866/1‑149 (MQ=255)                                                                                                                                               cgaggAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTCCAGGTGCCCGGCa  >  8:268462‑M2/6‑149 (MQ=255)                                                                                                                                                    |                                                                                                                                                CTTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAACCCTCGCGGGTACACCCGATCAACCATGTGGGCGAGCACTTCCAGGTGCCCGGCA  >  NC_002947/4000660‑4000949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.