New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4000753 =	52 (0.960)	3 (0.060)	3/244	NT	6.6%	coding (435/1365 nt)	dmoA‑II	dimethyl‑sulfide monooxygenase
	?	NC_002947	4000806 =	36 (0.710)					coding (488/1365 nt)	dmoA‑II	dimethyl‑sulfide monooxygenase

CGAACACCTGGGTTTTGGTGTCACCTTTTCGCTGACCTACGAACACCCCTACCCCTTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAAC  >  NC_002947/4000606‑4000895                                                                                                                                                     |                                                                                                                                               cGAACACCTGGGTTTTGGTGTCACCTTTTCGCTGACCTACGAACACCCCTACCCCTTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAAcc                                                                                                                                               >  1:49637/1‑149 (MQ=255)     tgccgggcacctggaagtgctcgcccacatggttgatcgggtgtacccgcgagggttcgatatagcgcccgctttcacgctccagcagcacggcgtcgtcgtcccagcttttctcccacagcttgtacagcacctgcaggtattCCTCg                                                                                                                                            >  8:268462‑M1/145‑149 (MQ=255)     cacCTGGGTTTTGGTGTCACCTTTTCGCTGACCTACGAACACCCCTACCCCTTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCgg                                                                                                                                           <  2:303459/149‑1 (MQ=255)        cTGGGTTTTGGTGTCACCTTTTCGCTGACCTACGAACACCCCTACCCCTTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGGCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCt                                                                                                                                        >  2:254602/1‑149 (MQ=255)                tGGTGTCAACTTTTCGCTGACCTACGACCACCCCTACCCCTTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTTGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGt                                                                                                                                 <  4:331972/148‑1 (MQ=255)                   tgtCACCTTTTCGCTGACCTACGAACACCCCTACCCCTTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAAc                                                                                                                             >  4:126548/1‑149 (MQ=255)                          ttttCGCTGACCTACGAACACCCCTACCCCTTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCa                                                                                                                      >  8:106008/1‑149 (MQ=255)                              cGCTGACCTACGAACACCCCTACCCCTTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGa                                                                                                                   <  7:194574/148‑1 (MQ=255)                                           gggtgtacccgcgagggttcgatatagcgcccgctttcacgctccagcagcacggcgtcgtcgtcccagcttttctcccacagcttgtacagcacctgcaggtattCCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGAc                                                                                                      <  5:293238‑M1/43‑1 (MQ=255)                                           acacCCCTACCCCTTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGAcc                                                                                                     >  2:11691/1‑149 (MQ=255)                                               ccctacccctTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGgc                                                                                                                                     <  2:227462/113‑1 (MQ=255)                                               ccctacccctTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGgc                                                                                                                                     >  1:227462/1‑113 (MQ=255)                                               ccctacccctTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGc                                                                                                 >  4:154431/1‑149 (MQ=255)                                                  cccgcgagggttcgatatagcgcccgctttcacgctccagcagcacggcgtcgtcgtcccagcttttctcccacagcttgtacagcacctgcaggtattCCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCg                                                                                               >  6:293238‑M1/100‑149 (MQ=255)                                                    cgcgagggttcgatatagcgcccgctttcacgctccagcagcacggcgtcgtcgtcccagcttttctcccacagcttgtacagcacctgcaggtattCCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAg                                                                                             >  3:120923‑M1/98‑149 (MQ=255)                                                    cccctTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGAcc                                                                                                     >  1:89577/1‑140 (MQ=255)                                                    cccctTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGAcc                                                                                                     <  2:89577/140‑1 (MQ=255)                                                    cccctTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAgg                                                                                            <  4:295111/149‑1 (MQ=255)                                                       ctTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGTAACATCGTCACC‑GGTTAGCTGGACCGCGCGGCGCGCAACCTCGGACTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAAt                                                                                         <  1:254602/149‑1 (MQ=37)                                                          cGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATAc                                                                                       <  2:49637/148‑1 (MQ=255)                                                            cccGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGcc                                                                                                >  4:228729/1‑137 (MQ=255)                                                            cccGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGcc                                                                                                <  3:228729/137‑1 (MQ=255)                                                            cccGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTg                                                                                    >  7:123113/1‑149 (MQ=255)                                                             ccGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTg                                                                                    >  7:268319/1‑148 (MQ=255)                                                                  gcATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTg                                                                              >  4:304376/1‑149 (MQ=255)                                                                    aTGTCCACGCTCGACCACCTGAGCAATGGCCTGGTCGGCTGGAACTTCGTCACC‑TGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCt                                                                            <  6:8446/149‑1 (MQ=255)                                                                    aTGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCt                                                                            <  8:268319/149‑1 (MQ=255)                                                                             cTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCt                                                                   <  7:106008/149‑1 (MQ=255)                                                                              tCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCtg                                                                  >  2:216648/1‑149 (MQ=255)                                                                                gACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCtgtg                                                                <  8:123113/149‑1 (MQ=255)                                                                                 accaccTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCACAACCTCGGCCTGGCGCGTCAACGGGGCCACGAGCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTgg                                                               >  1:321565/1‑149 (MQ=255)                                                                                  ccaccTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTg                                                                                                   >  5:208681/1‑112 (MQ=255)                                                                                  ccaccTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTg                                                                                                   <  6:208681/112‑1 (MQ=255)                                                                                  ccaccTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTgg                                                               >  8:300941/1‑148 (MQ=255)                                                                                      cTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGgaga                                                           >  2:240333/1‑148 (MQ=255)                                                                                        gAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGATCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGaa                                                          >  6:191569/1‑147 (MQ=255)                                                                                           cAATGGCCGGGTCGGCTGGAACATCGTCACCGGGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGc                                                      >  1:221098/1‑149 (MQ=255)                                                                                             aTGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTgg                                                   <  1:11691/149‑1 (MQ=255)                                                                                              tGGCCGGGTCGGCTCGAACATCGTCACC‑GGGTATCTGGACAGCGCTCCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACAAGCAGGTGCTGTACAACCAGTGGGAGCAAAGCTgcg                                                  >  5:199480/1‑147 (MQ=255)                                                                                                gCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGATCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGga                                                 <  5:191569/148‑1 (MQ=255)                                                                                                gCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGga                                                 <  3:154431/148‑1 (MQ=255)                                                                                                        ggCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGaa                                                                                          >  6:23775/1‑99 (MQ=255)                                                                                                        ggCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGaa                                                                                          <  5:23775/99‑1 (MQ=255)                                                                                                            ggAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCtgtg                                                                >  5:270228/1‑121 (MQ=255)                                                                                                            ggAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCtgtg                                                                <  6:270228/121‑1 (MQ=255)                                                                                                                cATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGtgctgc                                <  1:216648/149‑1 (MQ=255)                                                                                                                      cACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGgacgacgac                                          <  6:333403/133‑1 (MQ=255)                                                                                                                      cACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGgacgacgac                                          >  5:333403/1‑133 (MQ=255)                                                                                                                           gggTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGa                      <  7:300941/149‑1 (MQ=255)                                                                                                                             gTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGaaa                    <  3:126548/149‑1 (MQ=255)                                                                                                                               aTCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGCCCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGc                  >  4:126640/1‑149 (MQ=255)                                                                                                                                   ggACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGaa                     <  5:284002/142‑1 (MQ=255)                                                                                                                                   ggACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGaa                     >  6:284002/1‑142 (MQ=255)                                                                                                                                    gACAGCGCTGCGCACAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCgg                <  2:321565/146‑1 (MQ=255)                                                                                                                                           cTGCGCGCAACCTCGGCCTGGCGGGTCAACTGTGCCACGACCAACGCTTCGCGCTGGCCGAGGAATACCTGGAGGTGCTGTACAAGCTGTGGGAGAAAAGGTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATc      <  6:199480/149‑1 (MQ=255)                                                                                                                                            tGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATc      >  7:61066/1‑148 (MQ=255)                                                                                                                                               gcgcAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAAc  <  3:304376/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                               CGAACACCTGGGTTTTGGTGTCACCTTTTCGCTGACCTACGAACACCCCTACCCCTTCGCCCGGCGCATGTCCACGCTCGACCACCTGAGCAATGGCCGGGTCGGCTGGAACATCGTCACC‑GGGTATCTGGACAGCGCTGCGCGCAACCTCGGCCTGGCGCGTCAACGGGGCCACGACCAACGCTACGACCTGGCCGAGGAATACCTGCAGGTGCTGTACAAGCTGTGGGAGAAAAGCTGGGACGACGACGCCGTGCTGCTGGAGCGTGAAAGCGGGCGCTATATCGAAC  >  NC_002947/4000606‑4000895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.