New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4082497	59 (1.090)	4 (0.080)	4/248	NT	6.5%	coding (442/924 nt)	PP_3592	RpiR family transcriptional regulator
	?	NC_002947	= 4082542	59 (1.140)					coding (487/924 nt)	PP_3592	RpiR family transcriptional regulator

CCGTGGCTGGTGGGTGATCGCTTGCAAGATTACCGCCAGAACCAGGACGCCAGCGACAACGCCGGCAGCCTGGAGCTGGAAATCGCCGCCCTGGTGCGCGTACACGAATACCGCCAGAGCCCCGCCTGGCACAACGTGGCGCAACGCCTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4082344‑4082497 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgaTGCCGCGCTCGGTCTGGAAGCCGGCGATGAACACCCGCGGCTTGCTCGCCAGGCGTTGCGCCACGTTGTGCCAGGCGGGGCTCTGGCGGTATTCGTGTACGCGCACCAGGGCGGCGATTTCCAGCTCCAGGCTGCCGGCGTTGTCGC  <  NC_002947/4082542‑4082396                                                                                                                                                                                                                                                                                                               CCGTGGCTGGTGGGTGATCGCTTGCAAGATTACCGACAGAACCAGGACGCCAGCGACAACGCCGGCAGCCTGGAGCTGGAAATCGCCGCCCTGGTGCGCGTACACGAATACCGCCAGAGCCCCGCCTGGCACAACGTGGCGCAACGCCT                                                                                                                                                          >  7:307737/1‑149  CGTTGCTGGTGGGTGATCGCTTGCAAGATTACCGCCAGAACCAGGACGCCAGCGACAACGCCGGCAGCCTGGAGCTGGAAATCGCCGCCCTGGTGCGCGTACACGAATACCGCCAGAGCCCCGCCTGGCACAACGTGGCGCAACGCCTG                                                                                                                                                         <  2:52879/149‑1      GCTGGTGGGTGATCGCTTGCAAGATTACCGCCAGAACCAGGACGCCAGCGACAACGCCGGCAGCCTGGAGCTGGAAATCGCCGCCCTGGTGCGCGTACACGAATACCGCCAGAGCCCCGCCTGGCACAACGTGGCGCAACGCCTGGCGA                                                                                                                                                     <  2:21787/149‑1      GCTGGTGGGTGATCGCTTGCAAGATTACCGCCAGAACCAGGACGCCAGCGACAACGCCGGCAGCCTGGAGCTGGAAATCGCCGCCCTGGTGCGCGTACACGAATACCGCCAGAGCCCCGCCTGGCACAACGTGGCGCAACGCCTGGCGA                                                                                                                                                     <  2:241175/149‑1                      TTGCAAGATTACCGCCAGAACCAGGACGCCAGCGACAACGCCGGCAGCCTGGAGCTGGAAATCGCCGCCCTGGTGCGCGTACACGAATACCGCCAGAGCCCCGCCTGGCACAACGTGGCGCAACGCCTGGCGATGCCGCGCTCGGTCTG                                                                                                                                     >  1:115704/1‑149                                                   CAGCGACAACGCCGGCAGCCTGGAGCTGGAAATCGCCGCCCTGGTGCGCGTACACGAATACCGCCAGAGCCCCGCCTGGCACAACGTGGCGCAACGCCTGGCGATGCCGCGCTCGGTCTGGAAGCCGGCGATGAACACCCGCGGCTTGC                                                                                                        <  2:115704/149‑1                                                                     CCTGGAGCTGGAAATCGCCGCCCTGGTGCGCGTACACGAATACCGCCAGAGCCCCGCCTGGCACAACGTGGCGCAACGCCTGGCGATGCCGCGCTCGGTCTGGAAGCCGGCGATGAACACCCGCGGCTTGCTCGCCAGGCGTTGCG                                                                                         >  1:6011/1‑146                                                                     CCTGGAGCTGGAAATCGCCGCCCTGGTGCGCGTACACGAATACCGCCAGAGCCCCGCCTGGCACAACGTGGCGCAACGCCTGGCGATGCCGCGCTCGGTCTGGAAGCCGGCGATGAACACCCGCGGCTTGCTCGCCAGGCGTTGCG                                                                                         <  2:6011/146‑1                                                                                                                                                         GATGCCGCGCTCGGTCTGGAAGCCGGCGATGAACACCCGCGGCTTGCTCGCCAGGCGTTGCGCCACGTTGTGCCAGGCGGGGCTCTGGCGGTATTCGTGTACGCGCACCAGGGCGGCGATTTCCAACTCCAGGCTGCCGGCGTTGTCGC  <  8:283256/149‑1                                                                                                                                                                                                                                                                                                               CCGTGGCTGGTGGGTGATCGCTTGCAAGATTACCGCCAGAACCAGGACGCCAGCGACAACGCCGGCAGCCTGGAGCTGGAAATCGCCGCCCTGGTGCGCGTACACGAATACCGCCAGAGCCCCGCCTGGCACAACGTGGCGCAACGCCTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4082344‑4082497 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tggcgaTGCCGCGCTCGGTCTGGAAGCCGGCGATGAACACCCGCGGCTTGCTCGCCAGGCGTTGCGCCACGTTGTGCCAGGCGGGGCTCTGGCGGTATTCGTGTACGCGCACCAGGGCGGCGATTTCCAGCTCCAGGCTGCCGGCGTTGTCGC  <  NC_002947/4082542‑4082396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.