New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4337133 =	47 (0.870)	3 (0.060)	3/246	NT	7.2%	coding (82/885 nt)	PP_3811	LysR family transcriptional regulator
	?	NC_002947	4337186 =	33 (0.650)					coding (29/885 nt)	PP_3811	LysR family transcriptional regulator

TGCGTAGATTAGGCAGATGCACTTGTGGGAAAAAGCCGCTATAAAGTGTTTGACTGTCAGCTAGAGCAAGACAATGAACCCTTACGAAGACATGCGGATCTTTGCCCAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4337287‑4337133 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcaAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATCTACGCACAAGTCGCAGCGATGGCCCCAAAGGCCAGGCAAGACGCCCACTA  >  NC_002947/4337186‑4337331                                                                                                                                                                                                                                                                                                               TGCGTAGATTAGGCAGATGCACTTGTGGGAAAAAGCCGCTATAAAGTGTTTGACTGTCAGCGAGAGCAAGACAATGAACCCTTACGAAGACATGCGGATCTTTGCCCAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTC                                                                                                                                                          <  8:10201/149‑1      atATTAGGCAGATGCACTTGTGGGAAAAAGCCGCTATAAAGTGTTTGACTGTCATCTAGAGCAAGACAATGAACCCTTACGAAGACATGCGGATCTTTGCCCAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGG                                                                                                                                                      <  8:107129/146‑1       GATTAGGCAGATGCACTTGTGGGAAAAAGCCGCTATAAAGTGTTTGACTGTCAGCTAGAGCAAGACAATGAACCCTTACGAAGACATGCGGATCTTTGCCCAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGG                                                                                                                                                       <  1:220057/146‑1       GATTAGGCAGATGCACTTGTGGGAAAAAGCCGCTATAAAGTGTTTGACTGTCAGCTAGAGCAAGACAATGAACCCTTACGAAGACATGCGGATCTTTGCCCAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGG                                                                                                                                                       >  2:220057/1‑146                                                                                                      TTGCCCAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCT                                                                                                              <  8:304516/92‑1                                                                                                      TTGCCCAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGGCAAAGATCAGCATGTCTTCGTAAGGGTTCATTGTCTTGCT                                                                                                              >  7:304516/1‑92                                                                                                           CAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATCTACG                                                >  6:37404/1‑149                                                                                                                                                         GCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTCGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATCTACGCACAAGTCGCAGCGATGGCCCCAAAGGCCAGGCAAGACGCCCACTA  <  7:10201/149‑1                                                                                                                                                                                                                                                                                                               TGCGTAGATTAGGCAGATGCACTTGTGGGAAAAAGCCGCTATAAAGTGTTTGACTGTCAGCTAGAGCAAGACAATGAACCCTTACGAAGACATGCGGATCTTTGCCCAGGTGATGGAGGCAGGTAGTTTCACCGCTGCCGCCGACCGTCTGGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4337287‑4337133 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgggcaAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATCTACGCACAAGTCGCAGCGATGGCCCCAAAGGCCAGGCAAGACGCCCACTA  >  NC_002947/4337186‑4337331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.