New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4337133 =	47 (0.870)	3 (0.060)	3/246	NT	7.2%	coding (82/885 nt)	PP_3811	LysR family transcriptional regulator
	?	NC_002947	4337186 =	33 (0.650)					coding (29/885 nt)	PP_3811	LysR family transcriptional regulator

CACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCC  >  NC_002947/4336987‑4337276                                                                                                                                                   |                                                                                                                                                tagtgggcgtcttgcctggcctttggggccatcgctgcgacttgtgcgtagattaggcagatgcacttgtgggaaaaagccgctataaagtgtttgactgtcagcgagagcaagacaatgaacccttacgaagacatgcggatcttTGc                                                                                                                                               <  7:10201‑M1/3‑1 (MQ=255) cACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGc                                                                                                                                               >  3:1745/1‑149 (MQ=255)  aCTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGcc                                                                                                                                              >  1:114974/1‑149 (MQ=255)    ttCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGcc                                                                                                                                              >  2:17332/1‑147 (MQ=255)         ccAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACgg                                                                                                                                       >  8:74966/1‑149 (MQ=255)         ccAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACgg                                                                                                                                       >  3:87446/1‑149 (MQ=255)           agcagGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTc                                                                                                                                     <  4:1745/149‑1 (MQ=255)               ggCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTcggcg                                                                                                                                 <  1:106358/149‑1 (MQ=255)                  gcAGGGCCGACTGGTAGTTGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTcg                                                                                                                                    <  7:32961/143‑1 (MQ=255)                     gggCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGcc                                                                                                                                              >  4:79650/1‑130 (MQ=255)                     gggCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGcc                                                                                                                                              <  3:79650/130‑1 (MQ=255)                     gggCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCg                                                                                                                           <  2:114974/149‑1 (MQ=255)                       gCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGt                                                                                                                         <  6:291167/149‑1 (MQ=255)                          gACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGaa                                                                                                                      <  3:116552/149‑1 (MQ=255)                          gACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGa                                                                                                                       >  6:232087/1‑148 (MQ=255)                               gtagtaGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTAc                                                                                                                 >  1:144384/1‑149 (MQ=255)                               gtagtaGTGCTGCCCCAGTGGCGTGGCATCGAGGCACCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTAc                                                                                                                 <  7:6109/149‑1 (MQ=255)                                  gtagtGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCt                                                                                                               <  6:72094/148‑1 (MQ=255)                                           ccccAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCAt                                                                                                       <  1:17332/147‑1 (MQ=255)                                               cgtagattaggcagatgcacttgtgggaaaaagccgctataaagtgtttgactgtcagctagagcaagacaatgaacccttacgaagacatgcggatcttTGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTg                                                                                                 >  6:37404‑M1/101‑149 (MQ=255)                                                   gcgtggcATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGc                                                                                              <  2:144384/148‑1 (MQ=255)                                                    cgtggcATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCaa                                                                                            <  7:157454/149‑1 (MQ=255)                                                      tggcATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAg                                                                                          <  5:232087/149‑1 (MQ=255)                                                              aGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCt                                                                                                           <  8:199912/124‑1 (MQ=255)                                                              aGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCt                                                                                                           >  7:199912/1‑124 (MQ=255)                                                                gcgcCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGt                                                                                >  5:302827/1‑149 (MQ=255)                                                                gcgcCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGAATCAGGAGCCGACTGACCGATTGCTTGGACATGACCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCATCCATCACCTGGGAAAAGATACGCAGGt                                                                                >  6:146581/1‑149 (MQ=255)                                                                     gggTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAATCTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCg                                                                           >  8:266036/1‑149 (MQ=255)                                                                          gAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAgg                                                                      >  3:148885/1‑149 (MQ=255)                                                                               gTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTgg                                                                                                >  1:67755/1‑118 (MQ=255)                                                                               gTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTgg                                                                                                <  2:67755/118‑1 (MQ=255)                                                                               gTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCa                                                                 >  4:210798/1‑149 (MQ=255)                                                                                    gCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTc                                                            <  7:74966/149‑1 (MQ=255)                                                                                        gcgcACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGc                                                        >  4:196917/1‑149 (MQ=255)                                                                                            aCGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTa                                                    <  4:278265/149‑1 (MQ=255)                                                                                              gCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGc                                                  >  1:317561/1‑149 (MQ=255)                                                                                               cccAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCt                                                 <  4:87446/149‑1 (MQ=255)                                                                                                ccAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGc                                                                                    >  4:44769/1‑113 (MQ=255)                                                                                                ccAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGc                                                                                    <  3:44769/113‑1 (MQ=255)                                                                                                  aGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGa                                               >  8:207578/1‑148 (MQ=255)                                                                                                          ctcAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCaa                                        <  3:196917/147‑1 (MQ=255)                                                                                                            cAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAacac                                    >  6:100901/1‑149 (MQ=255)                                                                                                             agcaagacaatgaacccttacgaagacatgctgatcttTGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCaa                                                                                            >  7:304516‑M1/39‑92 (MQ=255)                                                                                                             agcaagacaatgaacccttacgaagacatgcggatcttTGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCaa                                                                                            <  8:304516‑M1/54‑1 (MQ=255)                                                                                                             aaGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAaca                                     <  3:210798/147‑1 (MQ=255)                                                                                                              aGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACtt                                  <  6:302827/149‑1 (MQ=255)                                                                                                              aGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACtt                                  <  7:207578/149‑1 (MQ=255)                                                                                                                   cATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTtata                              <  2:317561/148‑1 (MQ=255)                                                                                                                    aTCAGGCGCCGACTCCCCGATTGCTTGCACATGCCCAGACGGTCGCCGGAAGCGGTGAAACTACCTCCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGAAAGGCTTCGTTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGc                            >  2:211137/1‑149 (MQ=255)                                                                                                                       aGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGa                                               <  7:14397/127‑1 (MQ=255)                                                                                                                       aGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGa                                               >  8:14397/1‑127 (MQ=255)                                                                                                                            ccGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCttttt                    <  4:148885/149‑1 (MQ=255)                                                                                                                               aCTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTcc                  >  8:27144/1‑148 (MQ=255)                                                                                                                                cTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCca                <  5:100901/149‑1 (MQ=255)                                                                                                                                            ttGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCAt       >  7:254301/1‑146 (MQ=255)                                                                                                                                            ttGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCAt       <  8:254301/146‑1 (MQ=255)                                                                                                                                               gACATGCCCAGACGGTCGGCGGCAGCGGTGAAAGTACCTGCCTCCATCAGCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCGTTGTGTTGCTGTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGcc  <  1:211137/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                CACTTCACCCAGCAGGCGCAGGGCCGACTGGTAGTAGTGCTGCCCCAGTGGCGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCC  >  NC_002947/4336987‑4337276

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.