New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4337133 =	47 (0.870)	3 (0.060)	3/246	NT	7.2%	coding (82/885 nt)	PP_3811	LysR family transcriptional regulator
	?	NC_002947	4337186 =	33 (0.650)					coding (29/885 nt)	PP_3811	LysR family transcriptional regulator

CGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATCTACGCACAAGTCGCAGCGATGGCCCCAAAGGCCAGGCAAGACGCCCACTA  >  NC_002947/4337038‑4337331                                                                                                                                                     |                                                                                                                                                  cgtggcATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCaa                                                                                                                                                   <  7:157454/149‑1 (MQ=255)   tggcATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAg                                                                                                                                                 <  5:232087/149‑1 (MQ=255)             gcgcCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGt                                                                                                                                       >  5:302827/1‑149 (MQ=255)             gcgcCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGAATCAGGAGCCGACTGACCGATTGCTTGGACATGACCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCATCCATCACCTGGGAAAAGATACGCAGGt                                                                                                                                       >  6:146581/1‑149 (MQ=255)                  gggTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAATCTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCg                                                                                                                                  >  8:266036/1‑149 (MQ=255)                       gAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAgg                                                                                                                             >  3:148885/1‑149 (MQ=255)                            gTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCa                                                                                                                        >  4:210798/1‑149 (MQ=255)                                 gCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTc                                                                                                                   <  7:74966/149‑1 (MQ=255)                                     gcgcACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGc                                                                                                               >  4:196917/1‑149 (MQ=255)                                         aCGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTa                                                                                                           <  4:278265/149‑1 (MQ=255)                                           gCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGc                                                                                                         >  1:317561/1‑149 (MQ=255)                                            cccAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCt                                                                                                        <  4:87446/149‑1 (MQ=255)                                             ccAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGc                                                                                                                                           >  4:44769/1‑113 (MQ=255)                                             ccAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGc                                                                                                                                           <  3:44769/113‑1 (MQ=255)                                               aGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGa                                                                                                      >  8:207578/1‑148 (MQ=255)                                                       ctcAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCaa                                                                                               <  3:196917/147‑1 (MQ=255)                                                         cAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAacac                                                                                           >  6:100901/1‑149 (MQ=255)                                                          agcaagacaatgaacccttacgaagacatgctgatcttTGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCaa                                                                                                                                                   >  7:304516‑M1/39‑92 (MQ=255)                                                          agcaagacaatgaacccttacgaagacatgcggatcttTGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCaa                                                                                                                                                   <  8:304516‑M1/54‑1 (MQ=255)                                                          aaGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAaca                                                                                            <  3:210798/147‑1 (MQ=255)                                                           aGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACtt                                                                                         <  7:207578/149‑1 (MQ=255)                                                           aGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACtt                                                                                         <  6:302827/149‑1 (MQ=255)                                                                cATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTtata                                                                                     <  2:317561/148‑1 (MQ=255)                                                                 aTCAGGCGCCGACTCCCCGATTGCTTGCACATGCCCAGACGGTCGCCGGAAGCGGTGAAACTACCTCCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGAAAGGCTTCGTTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGc                                                                                   >  2:211137/1‑149 (MQ=255)                                                                    aGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGa                                                                                                      >  8:14397/1‑127 (MQ=255)                                                                    aGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGa                                                                                                      <  7:14397/127‑1 (MQ=255)                                                                         ccGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCttttt                                                                           <  4:148885/149‑1 (MQ=255)                                                                            aCTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTcc                                                                         >  8:27144/1‑148 (MQ=255)                                                                             cTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCca                                                                       <  5:100901/149‑1 (MQ=255)                                                                                         ttGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCAt                                                              <  8:254301/146‑1 (MQ=255)                                                                                         ttGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCAt                                                              >  7:254301/1‑146 (MQ=255)                                                                                            gACATGCCCAGACGGTCGGCGGCAGCGGTGAAAGTACCTGCCTCCATCAGCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCGTTGTGTTGCTGTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGcc                                                         <  1:211137/148‑1 (MQ=255)                                                                                               ttgcccaggtgatggaggcaggtagtttcaccgctgccgccgaccgtctgggcaAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGct                                                                                                              <  8:304516‑M2/38‑1 (MQ=255)                                                                                               ttgcccaggtgatggaggcaggtagtttcaccgctgccgccgaccgtctgggcaAAGATCAGCATGTCTTCGTAAGGGTTCATTGTCTTGct                                                                                                              >  7:304516‑M2/55‑92 (MQ=255)                                                                                                  CCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGATGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTaatat                                                   <  8:107129‑M1/148‑3 (MQ=255)                                                                                                   CCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATc                                                    >  2:220057‑M1/1‑146 (MQ=255)                                                                                                   CCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATc                                                    <  1:220057‑M1/146‑1 (MQ=255)                                                                                                    caggtgatggaggcaggtagtttcaccgctgccgccgaccgtctgggcaAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATCTACg                                                >  6:37404‑M2/50‑149 (MQ=255)                                                                                                      GACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTCGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATCTACGCa                                              <  8:10201‑M1/149‑1 (MQ=255)                                                                                                            cggcggCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATCTACGCACAAGTc                                        <  2:66254/149‑1 (MQ=255)                                                                                                                                 cTGCATCCATCACCTGTTCAAATATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCACACAAGTGCATCTGCCTAATCTACGCACAAGTCGCAGCGATGGCCCCAAAGGcc                   <  5:146581/149‑1 (MQ=255)                                                                                                                                    ccTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATCTACGCACAAGTCGCAGCGATGGCCCCAAAGGCCAgg                >  1:18063/1‑149 (MQ=255)                                                                                                                                     cTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATCTACGCACAAg                                          >  4:268913/1‑122 (MQ=255)                                                                                                                                     cTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATCTACGCACAAg                                          <  3:268913/122‑1 (MQ=255)                                                                                                                                                  gcaAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTCGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATCTACGCACAAGTCGCAGCGATGGCCCCAAAGGCCAGGCAAGACGCCCACTa  <  7:10201‑M2/146‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                  CGTGGCATCGAGGCGCCGGGTGGAGCGGTTGAGCAGGCGCACGCCCAGGCGCTCCTCAAGCTGCATCAGGCGCCGACTGACCGATTGCTTGGACATGCCCAGACGGTCGGCGGCAGCGGTGAAACTACCTGCCTCCATCACCTGGGCAAAGATCCGCATGTCTTCGTAAGGGTTCATTGTCTTGCTCTAGCTGACAGTCAAACACTTTATAGCGGCTTTTTCCCACAAGTGCATCTGCCTAATCTACGCACAAGTCGCAGCGATGGCCCCAAAGGCCAGGCAAGACGCCCACTA  >  NC_002947/4337038‑4337331

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.