New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4485486	46 (0.850)	4 (0.080)	3/244	NT	8.1%	coding (662/1302 nt)	PP_3977	hypothetical protein
	?	NC_002947	= 4485509	48 (0.950)					coding (685/1302 nt)	PP_3977	hypothetical protein

GAAAATCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4485332‑4485486 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaagcaGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGTGCAAGGATGAAGTATCGCCTGTATTCGGCGTCGAGATTGCGCAAGCGTATAGCGACAGTGAGGCGAGCGTAGGCTTCGGTTTTTCTACTGTCACTGTCATCCATGCAGCTCTG  <  NC_002947/4485509‑4485365                                                                                                                                                                                                                                                                                                              GAAAATCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACT                                                                                                                                                         >  1:234211/1‑149    AATCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAA                                                                                                                                                      <  3:44048/149‑1    AATCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAA                                                                                                                                                      <  3:48630/149‑1                                       CTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGT                                                                                                                   <  7:167989/149‑1                                          CATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGT                                                                                                                   >  7:117314/1‑146                                          CATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGT                                                                                                                   <  8:117314/146‑1                                            TGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCAGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGTGCAAG                                                                                                              <  4:2501/149‑1                                                                                                                                                     TGAAGCAGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGTGCAAGGATGAAGTATCGCCTGTATTCGGCGTCGAGATTGCGCAAGCGTATAGCGACAGTGAGGCGAGCGTAGGCTTCGGTTTTTCTACTGT                        >  7:321760/1‑130                                                                                                                                                     TGAAGCAGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGTGCAAGGATGAAGTATCGCCTGTATTCGGCGTCGAGATTGCGCAAGCGTATAGCGACAGTGAGGCGAGCGTAGGCTTCGGTTTTTCTACTGT                        <  8:321760/130‑1                                                                                                                                                         GCAGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGTGCAAGGATGAAGTATCGCCTGTATTCGGCGTCGAGATTGCGCAAGCGTATAGCGACAGTGAGGCGAGCGTAGGCTTCGGTTTTTCTACTGTCACTGTCATCCATGCAGCTCTG  >  5:278782/1‑148                                                                                                                                                                                                                                                                                                              GAAAATCTGGACATCGACTTCGGGGATTTGCTGCAGAGCTGCATGGATGACAGTGACAGTAGAAAAACCGAAGCCTACGCTCGCCTCACTGTCGCTATACGCTTGCGCAATCTCGACGCCGAATACAGGCGATACTTCATCCTTGCACTGAAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4485332‑4485486 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgaagcaGGCCGAGCTCCTTAGAGCTCAATTGCTTCAGTGCAAGGATGAAGTATCGCCTGTATTCGGCGTCGAGATTGCGCAAGCGTATAGCGACAGTGAGGCGAGCGTAGGCTTCGGTTTTTCTACTGTCACTGTCATCCATGCAGCTCTG  <  NC_002947/4485509‑4485365

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.