New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4978918	51 (0.940)	8 (0.160)	6/244	NT	13.6%	coding (504/786 nt)	flgG	flagellar basal‑body rod protein FlgG
	?	NC_002947	= 4978941	54 (1.060)					coding (481/786 nt)	flgG	flagellar basal‑body rod protein FlgG

CCAGCGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4978764‑4978918 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatcaccACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAGGTCGGCACCCCAGGCCTGAACG  <  NC_002947/4978941‑4978794                                                                                                                                                                                                                                                                                                                  CCAGCGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCC                                                                                                                                                             >  4:196960/1‑148  CAGCGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGA                                                                                                                                                           >  6:43494/1‑149  CAGCGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCC                                                                                                                                                             <  3:16814/147‑1     CGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGTGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCA                                                                                                                                                        <  1:74588/149‑1       TCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACC                                                                                                                                                      >  1:164704/1‑149                       GCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCGCTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACCACCGCCGGCAACCCGG                                                                                                                                      >  6:295503/1‑149                                GTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACCACCGCCGGCAACCCGGCTGCACAGG                                                                                                                             <  5:350615/149‑1                                     GGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACCACCGCCAGCAACCCGGCTGCACAGGTGATC                                                                                                                        >  5:141982/1‑149                                      GCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACCACCGCCGGCAACCCGGCTGCACAGGTGATCG                                                                                                                       <  2:111654/149‑1                                       CCTGGGGTGCCGACCTGAGGCGCGCCGCTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACCACCGCCGGCAACCCGGCTGCACAGGTGATCGG                                                                                                                      <  5:295503/149‑1                                       CCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACCACCGCCAGCAACCCGGCTGCACAGGTGATCGG                                                                                                                      <  6:141982/149‑1                                          GGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGAGACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACCACCGCCGGCAACCCGGCTGCACAGGTGATCG                                                                                                                       >  1:240505/1‑146                                          GGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACCACCGCCGGCAACCCGGCTGCACAGGTGATCG                                                                                                                       <  2:240505/145‑1                                                                                                                                                      GATCACCACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAGGTCGGCACCCCAGGCC        >  3:18050/1‑149                                                                                                                                                      GATCACCACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAGGTCGGCACCCCAGGCC        >  5:43494/1‑149                                                                                                                                                      GATCACCACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAGGTCGGCACCCCAGGCC        >  6:152457/1‑149                                                                                                                                                      GATCACCACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAGGTCGGCACCCCAGGCC        >  7:197981/1‑149                                                                                                                                                           CCACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAGGTCGGCACCCCAGGCCTGAAC   >  5:28143/1‑149                                                                                                                                                           CCACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAG                        >  2:313318/1‑128                                                                                                                                                           CCACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAG                        <  1:313318/128‑1                                                                                                                                                            CACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAGGTCGGCACCCCAGGCCTGAACG  >  7:96161/1‑149                                                                                                                                                            CACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAGGTCGGCACCCCAGGCCTGAA    <  5:125129/147‑1                                                                                                                                                            CACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAGGTCGGCACCCCAGGCCTGAA    >  6:125129/1‑147                                                                                                                                                                                                                                                                                                                  CCAGCGTCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGATGAAGTCGGCGGTCTGGATGTTGCCGATCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4978764‑4978918 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatcaccACCGCCGGCAACCCGGCTGCACAGGTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCGATCGGCGACAACCTGTTCCTCGAGACCGCCGCCAGTGGCGCGCCTCAGGTCGGCACCCCAGGCCTGAACG  <  NC_002947/4978941‑4978794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.