New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4978918	51 (0.940)	8 (0.160)	6/244	NT	13.6%	coding (504/786 nt)	flgG	flagellar basal‑body rod protein FlgG
	?	NC_002947	= 4978941	54 (1.060)					coding (481/786 nt)	flgG	flagellar basal‑body rod protein FlgG

TCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAGGCTCCAGGGCGTAGCCGTTGTCAGTGACGATCTGGCCGTCGGAGTTCAGGTGGAAGG  >  NC_002947/4978770‑4979066                                                                                                                                                       |                                                                                                                                                      tCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACC                                                                                                                                                       >  1:164704‑M1/1‑149 (MQ=255)  ctgcggCAAGCTGGGGCCAACACCGTGCAGGCCTGGGGCGCCGACCTGCGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGACGGCGGCGGTCTGGATGTTGCCGATCACCt                                                                                                                                                      <  6:286417/149‑1 (MQ=255)    gctgcAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCtgt                                                                                                                                                    >  5:284278/1‑149 (MQ=255)     ctgcAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCtgt                                                                                                                                                    <  2:164704/148‑1 (MQ=255)     ctgcAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGATCTGGATGTTGCCGATCACCt                                                                                                                                                      <  3:4068/146‑1 (MQ=255)        cAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAg                                                                                                                                                >  3:1434/1‑149 (MQ=255)         aaGGTGGTGCCAAAACCGTGCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGGTGGCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGc                                                                                                                                               <  8:67367/149‑1 (MQ=255)                 gCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCGCTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCaccgccggcaacccgg                                                                                                                                       >  6:295503‑M1/1‑133 (MQ=255)                  ccAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGcc                                                                                                                                      >  5:152457/1‑149 (MQ=255)                   cAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCcg                                                                                                                                     >  4:295911/1‑149 (MQ=255)                    aaaaCCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCcg‑g                                                                                                                                   >  4:149444/1‑149 (MQ=255)                    aaaaCCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCcg‑g                                                                                                                                   >  6:28143/1‑149 (MQ=255)                    aaaaCCGTTCAGGCCTGGGGTGCCGACCAGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCcg‑g                                                                                                                                   >  1:21484/1‑149 (MQ=255)                       aCCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCcg‑gcgg                                                                                                                                >  7:161645/1‑149 (MQ=255)                         cGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTg                                                                                                                              >  7:96161‑M2/1‑148 (MQ=255)                          gTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCaccgccggcaacccggctgcacagg                                                                                                                              <  5:350615‑M1/149‑26 (MQ=255)                          gTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTgg                                                                                                                             >  5:28143‑M2/1‑147 (MQ=255)                           ttCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTg                                                                                                                              >  6:125129‑M2/1‑146 (MQ=255)                           ttCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTg                                                                                                                              <  5:125129‑M2/147‑2 (MQ=255)                               ggCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCaccgccagcaacccggctgcacaggtgatc                                                                                                                         >  5:141982‑M1/1‑119 (MQ=255)                               ggCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTggtgatc                                                                                                                        >  3:18050‑M2/1‑142 (MQ=255)                               ggCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTggtgatc                                                                                                                        >  6:152457‑M2/1‑142 (MQ=255)                               ggCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTggtgatc                                                                                                                        >  7:197981‑M2/1‑142 (MQ=255)                               ggCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTggtgatc                                                                                                                        >  5:43494‑M2/1‑142 (MQ=255)                                gCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCaccgccggcaacccggctgcacaggtgatcg                                                                                                                        <  2:111654‑M1/149‑32 (MQ=255)                                 ccTGGGGTGCCGACCTGAGGCGCGCCGCTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCaccgccggcaacccggctgcacaggtgatcgg                                                                                                                       <  5:295503‑M1/149‑33 (MQ=255)                                 ccTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCaccgccagcaacccggctgcacaggtgatcgg                                                                                                                       <  6:141982‑M1/149‑33 (MQ=255)                                    ggggTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGAGACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCaccgccggcaacccggctgcacaggtgatcg                                                                                                                        >  1:240505‑M1/1‑115 (MQ=255)                                    ggggTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCaccgccggcaacccggctgcacaggtgatcg                                                                                                                        <  2:240505‑M1/145‑32 (MQ=255)                                     gggTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACg                                                                                                                  >  1:294543/1‑149 (MQ=255)                                     gggTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACg                                                                                                                  >  2:39344/1‑149 (MQ=255)                                      ggTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACgg                                                                                                                 <  3:149444/149‑1 (MQ=255)                                      ggTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACgg                                                                                                                 <  6:154340/149‑1 (MQ=255)                                           cGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCg                                                                                                            >  5:90153/1‑149 (MQ=255)                                               cTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTgg                                                                                                                             <  1:313318‑M2/128‑3 (MQ=255)                                               cTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTgg                                                                                                                             >  2:313318‑M2/1‑126 (MQ=255)                                               cTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCt                                                                                                        <  6:284278/149‑1 (MQ=255)                                                    gcgcgcCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGcc                                                                                                    >  1:293201/1‑148 (MQ=255)                                                           aCTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGa                                                                                            <  5:103500/149‑1 (MQ=255)                                                            cTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGaa                                                                                           <  4:1434/149‑1 (MQ=255)                                                                cggcggTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCGAGCTGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGt                                                                                        >  1:115339/1‑149 (MQ=255)                                                                 ggcggTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCt                                                                                      >  3:285662/1‑149 (MQ=255)                                                                       ctcGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTTGGATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGcgcg                                                                                 >  1:76904/1‑149 (MQ=255)                                                                        tcGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTgg                                                                                                      <  8:57564/126‑1 (MQ=255)                                                                        tcGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTgg                                                                                                      >  7:57564/1‑126 (MQ=255)                                                                          gAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTc                                                                                       >  7:49110/1‑139 (MQ=255)                                                                          gAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTc                                                                                       <  8:49110/139‑1 (MQ=255)                                                                          gAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGcgt                                                                                <  8:161645/146‑1 (MQ=255)                                                                          gAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGAGcgtcgt                                                                             >  2:51654/1‑149 (MQ=255)                                                                             gA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAg                                                                          <  6:90153/149‑1 (MQ=255)                                                                                  aGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTgcg                                                                                   <  5:60110/136‑1 (MQ=255)                                                                                  aGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTgcg                                                                                   >  6:60110/1‑136 (MQ=255)                                                                                    gTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGa                                                                    <  1:39344/149‑1 (MQ=255)                                                                                     ttGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGAc                                                                   <  3:196960/149‑1 (MQ=255)                                                                                        tCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGCTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAAt                                                                >  5:191863/1‑149 (MQ=255)                                                                                          gCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATgg                                                              <  2:76904/149‑1 (MQ=255)                                                                                          gCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATg                                                               <  3:295911/148‑1 (MQ=255)                                                                                            cGATCGCCTGCAGGCTGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATgg                                                              >  8:239807/1‑147 (MQ=255)                                                                                             gATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAg                                                           >  1:40290/1‑149 (MQ=255)                                                                                                          ccggccggGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAGGCTCCAGGGCGTa                                              <  2:21484/149‑1 (MQ=255)                                                                                                               cggGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGcgtcg                                                                              <  7:286838/112‑1 (MQ=255)                                                                                                               cggGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGcgtcg                                                                              >  8:286838/1‑112 (MQ=255)                                                                                                                  gTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAGGCTCCAGGGCGTAGCCGTTg                                       >  7:93174/1‑148 (MQ=255)                                                                                                                  gTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAGGCTCCAGGGCGTAGCCGTTGt                                      <  4:285662/149‑1 (MQ=255)                                                                                                                      gatgaAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAGGCTCCAGGGCGTAGCCGTTGTCAg                                   >  2:215603/1‑149 (MQ=255)                                                                                                                       atgaAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGcgt                                                                                <  1:55017/103‑1 (MQ=255)                                                                                                                       atgaAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGcgt                                                                                >  2:55017/1‑103 (MQ=255)                                                                                                                          aaGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAGGCTCCAGGGCGTAGCCGTTGTCAGTGAc                               <  2:293201/149‑1 (MQ=255)                                                                                                                                   gTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAGGCTCCAGGGCGTAGCCGTTGTCAGTGACGATCTGGcc                      <  2:40290/149‑1 (MQ=255)                                                                                                                                    tCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAGGCTCCAGGGCGTAGCCGTTGTCAGTGACGATCTGGCCg                     >  3:259025/1‑149 (MQ=255)                                                                                                                                      tGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAGGCTCCAGGGCGTAGCCGTTGTCAGTGACGATCTGGCCGTc                   >  6:288067/1‑149 (MQ=255)                                                                                                                                        gATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAGGCTCCAGGGCGTAGCCGTTGTCAGTGACGATCTGGCCGTc                   <  7:239807/147‑1 (MQ=255)                                                                                                                                               ccGATCACCTGTGCAGCCGGGTTGCTG‑GCGGTggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcaggtcggcaccccagg          <  6:141982‑M2/149‑118 (MQ=255)                                                                                                                                               ccGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagcggcgcgcctcaggtcggcaccccagg          <  5:295503‑M2/149‑118 (MQ=255)                                                                                                                                                cGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcaggtcggcaccccaggc         <  2:111654‑M2/149‑119 (MQ=255)                                                                                                                                                cGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcaggtcggcacccc             <  2:240505‑M2/145‑115 (MQ=255)                                                                                                                                                cGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgtctcctcgagaccgccgccagtggcgcgcctcaggtcggcacccc            >  1:240505‑M2/1‑31 (MQ=255)                                                                                                                                                cGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAGGCTCCAGGGCGTAGACGTTGTCAGTGACGATCTGGCCGTCGGAGTTCAgg         >  3:41502/1‑149 (MQ=255)                                                                                                                                                 gATCACCaccgccggcaacccggctgcacaggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcaggtcggcaccccaggcc         >  5:43494‑M1/1‑7 (MQ=255)                                                                                                                                                 gATCACCaccgccggcaacccggctgcacaggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcaggtcggcaccccaggcc         >  7:197981‑M1/1‑7 (MQ=255)                                                                                                                                                 gATCACCaccgccggcaacccggctgcacaggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcaggtcggcaccccaggcc         >  3:18050‑M1/1‑7 (MQ=255)                                                                                                                                                 gATCACCaccgccggcaacccggctgcacaggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcaggtcggcaccccaggcc         >  6:152457‑M1/1‑7 (MQ=255)                                                                                                                                                 gATCACCTGTGCAGCCGGGTTGCTG‑GCGGTggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcaggtcggcaccccaggcc        >  5:141982‑M2/1‑30 (MQ=255)                                                                                                                                                 gATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAGGCTCCAGGGCGTAGCCGTTGTCAGTGACGATCTGGCCGTCGGAGTTCAGGt        <  4:259025/149‑1 (MQ=255)                                                                                                                                                      ccaccgccggcaacccggctgcacaggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcaggtcggcaccccaggcctgaac    >  5:28143‑M1/1‑2 (MQ=255)                                                                                                                                                      ccaccgccggcaacccggctgcacaggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcag                         >  2:313318‑M1/1‑2 (MQ=255)                                                                                                                                                      ccaccgccggcaacccggctgcacaggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcag                         <  1:313318‑M1/128‑127 (MQ=255)                                                                                                                                                      ccTGTGCAGCCGGGTTGCCG‑GCGGTggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcaggtcggcaccccaggcctgaac   <  5:350615‑M2/149‑125 (MQ=255)                                                                                                                                                      ccTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGCCCAACGGTGAAGGTCTGCGCGTCGTGAGGCACGACAATGGCAGGCTCAAGGGCGTAGCCGTTGTCAGTGACGATATGGCCGTCGGAGTTCAGGTGGAAg   >  2:52553/1‑149 (MQ=255)                                                                                                                                                       caccgccggcaacccggctgcacaggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcaggtcggcaccccaggcctgaacg   >  7:96161‑M1/1‑1 (MQ=255)                                                                                                                                                       caccgccggcaacccggctgcacaggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcaggtcggcaccccaggcctgaa     >  6:125129‑M1/1‑1 (MQ=255)                                                                                                                                                       caccgccggcaacccggctgcacaggtgatcggcaacatccagaccgccgacttcatcaacccggccggcctgcaggcgatcggcgacaacctgttcctcgagaccgccgccagtggcgcgcctcaggtcggcaccccaggcctgaa     <  5:125129‑M1/147‑147 (MQ=255)                                                                                                                                                       cTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGt                                                                                        <  5:103888/63‑1 (MQ=255)                                                                                                                                                       cTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGt                                                                                        >  6:103888/1‑63 (MQ=255)                                                                                                                                                       cTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAGGCTCCAGGGCGTAGCCGTTGTCAGTGACGATCTGGCCGTCGGAGTTCAGGTGGAAgg  >  1:328053/1‑149 (MQ=255)                                                                                                                                                       |                                                                                                                                                      TCTGCTGCAAGGTGGTGCCAAAACCGTTCAGGCCTGGGGTGCCGACCTGAGGCGCGCCACTGGCGGCGGTCTCGAGGA‑ACAGGTTGTCGCCGATCGCCTGCAGGCCGGCCGGGTT‑GATGAAGTCGGCGGTCTGGATGTTGCCGATCACCTGTGCAGCCGGGTTGCCG‑GCGGTGGTGATCGACACGGTGCCGTCCTGGCCAACGGTGAAGGTCTGCGCGTCGTTAGGCACGACAATGGCAGGCTCCAGGGCGTAGCCGTTGTCAGTGACGATCTGGCCGTCGGAGTTCAGGTGGAAGG  >  NC_002947/4978770‑4979066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.