New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5021656 =	35 (0.650)	5 (0.100)	4/240	NT	11.6%	intergenic (‑57/+42)	PP_4425/PP_4426	amino acid ABC transporter ATP‑binding protein/amino acid ABC transporter permease
	?	NC_002947	5021716 =	44 (0.880)					coding (639/657 nt)	PP_4426	amino acid ABC transporter permease

CGTTCCGATATCTTGAGCCCATCACCATGGTAGGCGTGTTCTTCCTTGCTCTGAGTATTGTTCTGGCTTATTTGGTACGCCGCGTTGAAGCGCGCTTGGAGCAAAAATAATGACCACCTCTCCAGTTTCCAACATTCAGATAGCTCCAAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5021807‑5021656 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctccaagcgCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGACAGTGATAGCTGA  >  NC_002947/5021716‑5021862                                                                                                                                                                                                                                                                                                             CGTTCCGATATCTTGAGCCCATCACCATGGTAGGCGTGTTCTTCCTTGCTCTGAGTATTGTTCTGGCTTATTTGGTACGCCGCGTTGAAGCGCGCTTGGAGCAAAAATAATGACCACCTCTCCAGTTTCCAACATTCAGATAGCTCCAA                                                                                                                                                        <  6:307451/149‑1  GTTCCGATATCTTGAGCCCATGACCATGGTAGTCGTGTTCTTCCTTGCTCTGAGTATTGTTCTGGCTTATTTGGTACGCCGCGTTGAAGCGCGCTTGGAGCAAAAATAATGACCACCTCTGCAGTTTCCAACATTCAGATAGCTCCAAG                                                                                                                                                       <  3:62921/149‑1                                                                                              GCTTGGAGCAAAAATAATGACCACCTCTCCAGTTTCCAACATTCAGATAGCTCCAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAA                                                           >  3:157970/1‑149                                                                                              GCTTGGAGCAAAAATAATGACCACCTCTCCAGTTTCCAACATTCAGATAGCTCCAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATC                                                               <  5:223580/145‑1                                                                                              GCTTGGAGCAAAAATAATGACCACCTCTCCAGTTTCCAACATTCAGATAGCTCCAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATC                                                               >  6:223580/1‑145                                                                                                TTGGAGCAAAAATAATGACCACCTCTCCAGTTTCCAACATTCAGATAGCTCCAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACG                                                         >  8:241766/1‑149                                                                                                       AAAAATAATGACCACCTCTCCAGTTTCCAACATTCAGATAGCTCCAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGA                                                  <  7:241766/149‑1                                                                                                                                               GCTCCAAGCGCGCTTCAACGCGGCGTACCATATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGACAGT           <  2:128266/148‑1                                                                                                                                                CTCCAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGACAGTGA         <  7:279424/149‑1                                                                                                                                                 TCCAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGACAGT           >  1:157629/1‑146                                                                                                                                                 TCCAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGACAGT           <  2:157629/146‑1                                                                                                                                                        GCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGACAGTGATAGCTGA  >  4:189542/1‑148                                                                                                                                                                                                                                                                                                             CGTTCCGATATCTTGAGCCCATCACCATGGTAGGCGTGTTCTTCCTTGCTCTGAGTATTGTTCTGGCTTATTTGGTACGCCGCGTTGAAGCGCGCTTGGAGCAAAAATAATGACCACCTCTCCAGTTTCCAACATTCAGATAGCTCCAAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5021807‑5021656 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctccaagcgCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGACAGTGATAGCTGA  >  NC_002947/5021716‑5021862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.