New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5021656 =	35 (0.650)	5 (0.100)	4/240	NT	11.6%	intergenic (‑57/+42)	PP_4425/PP_4426	amino acid ABC transporter ATP‑binding protein/amino acid ABC transporter permease
	?	NC_002947	5021716 =	44 (0.880)					coding (639/657 nt)	PP_4426	amino acid ABC transporter permease

TTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGACAGTGATAGCTGA  >  NC_002947/5021574‑5021862                                                                                                                                                |                                                                                                                                                   ttAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTc                                                                                                                                               >  3:230636/1‑148 (MQ=255)   aGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAAc                                                                                                                                            >  6:296685/1‑149 (MQ=255)        cGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACgcggc                                                                                                                                       >  2:150321/1‑149 (MQ=255)             cGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTAcc                                                                                                                                  <  1:145026/149‑1 (MQ=255)             cGGAAGCTAAACATGGGCATGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTAcc                                                                                                                                  <  4:16393/149‑1 (MQ=255)                   cTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATaa                                                                                                                            <  2:68540/149‑1 (MQ=255)                    tAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAg                                                                                                                           >  5:134110/1‑149 (MQ=255)                    tAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAAATGACACCTGTCAAAATTTCGCTGGGAGCTATCTGAATGTTTGAAACTGGAGAGGTGGTCATTATTTTTGCTA‑CAAGCGCGCTGCAAAGCGGCGTACCAaagaag                                                                                                                           >  7:164013/1‑149 (MQ=255)                      aCCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCGGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGcc                                                                                                                         <  7:283037/149‑1 (MQ=255)                       cccttcgCTTGCCTACGGCAGGTGACGCAATGTCGCCTGAACGGACAACTGTCAAAATTTCTCTTGTAGCTATCTGAATTCTGGAACCTGGAGAGGTGGTAATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATCATCCa                                                                                                                        <  8:164013/143‑1 (MQ=255)                        caagggCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTCACAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCa                                                                                                                        <  1:225942/146‑1 (MQ=255)                        cATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGc                                                                                                                          <  8:167308/146‑1 (MQ=255)                        cATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGc                                                                                                                          >  7:167308/1‑146 (MQ=255)                                     aTGGCCGGGTACGAAATGGCGCCTGAACTGACAACTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTGATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCaga                                                                                                          <  8:104125/149‑1 (MQ=255)                                           ggggACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAgg                                                                                                    <  7:105454/149‑1 (MQ=255)                                               aCGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGgaaga                                                                                                <  6:134110/149‑1 (MQ=255)                                                        cgcCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTTGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACAAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCt                                                                                        <  3:112544/148‑1 (MQ=255)                                                              aaCTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATgg                                                                                 <  6:221018/149‑1 (MQ=255)                                                                         gTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CCAGCGCGCTTCAAAGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTc                                                                       >  5:240040/1‑148 (MQ=255)                                                                          tCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTc                                                                       >  5:29418/1‑147 (MQ=255)                                                                            aaaaTTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGCACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTc                                                                       >  2:302005/1‑145 (MQ=255)                                                                            aaaaTTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGgaa                                                                                                  >  8:263994/1‑118 (MQ=255)                                                                            aaaaTTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGgaa                                                                                                  <  7:263994/118‑1 (MQ=255)                                                                            aaaaTTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTc                                                                       >  8:175194/1‑145 (MQ=255)                                                                                tttCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATc                                                               <  1:150321/149‑1 (MQ=255)                                                                                     gcttggagcaaaaataatgaccacctctccagtttccaacattcagatagctccaagcgCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATc                                                               <  5:223580‑M2/86‑1 (MQ=255)                                                                                     gcttggagcaaaaataatgaccacctctccagtttccaacattcagatagctccaagcgCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATc                                                               >  6:223580‑M2/60‑145 (MQ=255)                                                                                     gcttggagcaaaaataatgaccacctctccagtttccaacattcagatagctccaagcgCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGaa                                                           >  3:157970‑M2/60‑149 (MQ=255)                                                                                     CTTGGAGCTATCTGAATGTTGGAAACTGCAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGACTACCATGGTCATGGGCTCAAGATATCGGAAc                                                          <  3:62921‑M1/149‑1 (MQ=255)                                                                                      TTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACg                                                         <  6:307451‑M1/149‑1 (MQ=255)                                                                                       ttggagcaaaaataatgaccacctctccagtttccaacattcagatagctccaagcgCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACg                                                         >  8:241766‑M2/58‑149 (MQ=255)                                                                                              aaaaataatgaccacctctccagtttccaacattcagatagctccaagcgCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCaga                                                  <  7:241766‑M2/99‑1 (MQ=255)                                                                                                  gAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCaa                                                                     <  1:114210/125‑1 (MQ=255)                                                                                                  gAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCaa                                                                     >  2:114210/1‑125 (MQ=255)                                                                                                   aaTGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATAGGCTCAAGAAATCGGAACGACTCAGAGACGAt                                            >  6:242834/1‑149 (MQ=255)                                                                                                     tGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGt                                          >  6:97755/1‑149 (MQ=255)                                                                                                       ttGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTc                                        >  2:187117/1‑149 (MQ=255)                                                                                                       ttGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTc                                        >  6:62875/1‑149 (MQ=255)                                                                                                        tGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCt                                       >  3:305108/1‑149 (MQ=255)                                                                                                          gAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCttt                                     <  5:296685/149‑1 (MQ=255)                                                                                                              cTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCttt                                     <  1:209919/145‑1 (MQ=255)                                                                                                              cTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCttt                                     >  2:209919/1‑145 (MQ=255)                                                                                                                 gagaGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTtgcttgct                              <  5:307451/149‑1 (MQ=255)                                                                                                                  agagGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTtgctg                             <  7:175194/149‑1 (MQ=255)                                                                                                                         gtCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGCACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGAtc                      <  4:230636/149‑1 (MQ=255)                                                                                                                         gtCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGAtc                      <  5:62875/149‑1 (MQ=255)                                                                                                                            attattTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGAtctc                    >  6:164646/1‑148 (MQ=255)                                                                                                                            attattTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGAtctc                    >  8:279424/1‑148 (MQ=255)                                                                                                                             ttattTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGTAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCaa                  >  7:246844/1‑149 (MQ=255)                                                                                                                             ttattTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCaa                  <  4:305108/149‑1 (MQ=255)                                                                                                                             ttattTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCaa                  >  1:306216/1‑149 (MQ=255)                                                                                                                                tttttGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGa               >  7:152514/1‑149 (MQ=255)                                                                                                                                      gctccaagcgCGCTTCAACGCGGCGTACCATATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGACAGt           <  2:128266‑M2/138‑1 (MQ=255)                                                                                                                                       ctccaagcgCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGACAGTGa         <  7:279424‑M2/140‑1 (MQ=255)                                                                                                                                        tccaagcgCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGACAGt           <  2:157629‑M2/138‑1 (MQ=255)                                                                                                                                        tccaagcgCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGACAGt           >  1:157629‑M2/9‑146 (MQ=255)                                                                                                                                               gCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGACAGTGATAGCTGa  >  4:189542‑M2/2‑148 (MQ=255)                                                                                                                                                |                                                                                                                                                   TTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATCGGAACGTCTCAGAGCCGATGTTCTTTGCTTGCTGCATGATCTCAACGACAGTGATAGCTGA  >  NC_002947/5021574‑5021862

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.