| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5021656 = | 35 (0.650) | 5 (0.100) | 4/240 | NT | 11.6% | intergenic (‑57/+42) | PP_4425/PP_4426 | amino acid ABC transporter ATP‑binding protein/amino acid ABC transporter permease |
| ? | NC_002947 | 5021716 = | 44 (0.880) | coding (639/657 nt) | PP_4426 | amino acid ABC transporter permease | |||||
GCGACTTTTTCGCCTGCCGAAACATCCAGTTCCAGGCCGTCCAAAACAGTGAAGTTGCCATATCGCTTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATC > NC_002947/5021508‑5021801 | gCGACTTTTTCGCCTGCCGAAACATCCAGTTCCAGGCCGTCCAAAACAGTGAAGTTGCCATATCGCTTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTc < 3:79614/149‑1 (MQ=255) tcagctatcactgtcgttgagatcatgcagcaagcaaagaacatcggctctgagacgttccgatatcttgagcccatcaccatggtaggcgtgttcttccttgctctgagtattgttctggcttatttggtacgccgcgttgaagcgc > 4:189542‑M1/148‑148 (MQ=255) tttttCGCCTGCCGAAACATCCAGTTCCAGGCCGTCCAAAACAGTGAAGTTGCCATATCGCTTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTg > 1:128266/1‑149 (MQ=255) tcactgtcgttgagatcatgcagcaagcaaagaacatcggctctgagacgttccgatatcttgagcccatcaccatggtaggcgtgttcttccttgctctgagtattgttctggcttatttggtacgccgcgttgaagcgCGCTTGGAg < 7:279424‑M1/9‑1 (MQ=255) actgtcgttgagatcatgcagcaagcaaagaacatcggctctgagacgttccgatatcttgagcccatcaccatggtaggcgtgttcttccttgctctgagtattgttctggcttatttggtacgccgcgttgaagcgCGCTTGGa > 1:157629‑M1/139‑146 (MQ=255) actgtcgttgagatcatgcagcaagcaaagaacatcggctctgagacgttccgatatcttgagcccatcaccatggtaggcgtgttcttccttgctctgagtattgttctggcttatttggtacgccgcgttgaagcgCGCTTGGa < 2:157629‑M1/8‑1 (MQ=255) actgtcgttgagatcatgcagcaagcaaagaacatcggctctgagacgttccgatatcttgagcccatcaccatggtaggcgtgttcttccttgctctgagtattgttctggcttatatggtacgccgcgttgaagcgCGCTTGGAGc < 2:128266‑M1/10‑1 (MQ=255) ccTGCCGAAACATCCAGTTCCAGGCCGTCCAAAACAGTGAAGTTGCCATATCGCTTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTAt < 3:125831/149‑1 (MQ=255) ccGAAACATCCAGTTCCAGGCCGTCCAAAACAGTGAAGTTGCCATATCGCTTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCGAAATTTCGCTTGGAGCTATCTg > 1:68540/1‑148 (MQ=255) aaaCATCCAGTTCCAGGCCGTCCAAAACAGTGAAGTTGCCATATCGCTTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCg < 8:128748/131‑1 (MQ=255) aaaCATCCAGTTCCAGGCCGTCCAAAACAGTGAAGTTGCCATATCGCTTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCg > 7:128748/1‑131 (MQ=255) aCATCCAGTTCCAGGCCGTCCAAAACAGTGAAGTTGCCATATCGCTTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGtt > 2:225942/1‑149 (MQ=255) gCCGTCCAAAACAGTGAAGTTGCCATATCGCTTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAgg > 5:221018/1‑149 (MQ=255) ccAAAACAGTGAAGTTGCCATATCGCTTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAggtggt > 2:145026/1‑148 (MQ=255) aaCAGTGAAGTTGCCATATCGCTTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCatta > 8:105454/1‑149 (MQ=255) tctgagacgttccgatatcttgagcccatcaccatggtaggcgtgttcttccttgctctgagtattgttctggcttatttggtacgccgcgttgaagcgCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTAttttt < 7:241766‑M1/50‑1 (MQ=255) aGTTGCCATATCGCTTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGGCATTATTTTTGCt < 3:301071/149‑1 (MQ=255) gTTGCCATATCGCTTAGTTACGCTGCGGAAGCTAACCATGGGCATGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGCCACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTc > 7:104125/1‑149 (MQ=255) cgttccgatatcttgagcccatcaccatggtaggcgtgttcttccttgctctgagtattgttctggcttatttggtacgccgcgttgaagcgCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑Caa > 8:241766‑M1/93‑149 (MQ=255) ttccgatatcttgagcccatcaccatggtaggcgtgttcttccttgctctgagtattgttctggcttatttggtacgccgcgttgaagcgCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAgc > 3:157970‑M1/91‑149 (MQ=255) gatatcttgagcccatcaccatggtaggcgtgttcttccttgctctgagtattgttctggcttatttggtacgccgcgttgaagcgCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAgc < 5:223580‑M1/59‑1 (MQ=255) gatatcttgagcccatcaccatggtaggcgtgttcttccttgctctgagtattgttctggcttatttggtacgccgcgttgaagcgCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAgc > 6:223580‑M1/87‑145 (MQ=255) ttAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTc > 3:230636/1‑148 (MQ=255) aGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAAc > 6:296685/1‑149 (MQ=255) cGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACgcggc > 2:150321/1‑149 (MQ=255) cGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTAcc < 1:145026/149‑1 (MQ=255) cGGAAGCTAAACATGGGCATGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTAcc < 4:16393/149‑1 (MQ=255) cTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATaa < 2:68540/149‑1 (MQ=255) tAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAg > 5:134110/1‑149 (MQ=255) tAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAAATGACACCTGTCAAAATTTCGCTGGGAGCTATCTGAATGTTTGAAACTGGAGAGGTGGTCATTATTTTTGCTA‑CAAGCGCGCTGCAAAGCGGCGTACCAaagaag > 7:164013/1‑149 (MQ=255) aCCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCGGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGcc < 7:283037/149‑1 (MQ=255) cccttcgCTTGCCTACGGCAGGTGACGCAATGTCGCCTGAACGGACAACTGTCAAAATTTCTCTTGTAGCTATCTGAATTCTGGAACCTGGAGAGGTGGTAATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATCATCCa < 8:164013/143‑1 (MQ=255) caagggCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTCACAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCa < 1:225942/146‑1 (MQ=255) cATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGc < 8:167308/146‑1 (MQ=255) cATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGc > 7:167308/1‑146 (MQ=255) cGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTgg > 6:123350/1‑72 (MQ=255) cGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTgg < 5:123350/72‑1 (MQ=255) aTGGCCGGGTACGAAATGGCGCCTGAACTGACAACTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTGATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCaga < 8:104125/149‑1 (MQ=255) ggggACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAgg < 7:105454/149‑1 (MQ=255) aCGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGgaaga < 6:134110/149‑1 (MQ=255) cgcCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTTGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACAAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCt < 3:112544/148‑1 (MQ=255) aaCTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATgg < 6:221018/149‑1 (MQ=255) gTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CCAGCGCGCTTCAAAGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTc > 5:240040/1‑148 (MQ=255) tCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTc > 5:29418/1‑147 (MQ=255) aaaaTTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGCACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTc > 2:302005/1‑145 (MQ=255) aaaaTTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGgaa < 7:263994/118‑1 (MQ=255) aaaaTTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGgaa > 8:263994/1‑118 (MQ=255) aaaaTTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTc > 8:175194/1‑145 (MQ=255) tttCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATc < 1:150321/149‑1 (MQ=255) | GCGACTTTTTCGCCTGCCGAAACATCCAGTTCCAGGCCGTCCAAAACAGTGAAGTTGCCATATCGCTTAGTTACGCTGCGGAAGCTAACCATGGGCTTGCCGATGGCCGGGGACGAAATGGCGCCTGAACTGACACCTGTCAAAATTTCGCTTGGAGCTATCTGAATGTTGGAAACTGGAGAGGTGGTCATTATTTTTGCTC‑CAAGCGCGCTTCAACGCGGCGTACCAAATAAGCCAGAACAATACTCAGAGCAAGGAAGAACACGCCTACCATGGTGATGGGCTCAAGATATC > NC_002947/5021508‑5021801 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |