New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5045338	41 (0.760)	4 (0.080)	3/240	NT	9.0%	intergenic (‑140/+41)	PP_5681/PP_4449	hypothetical protein/hypothetical protein
	?	NC_002947	= 5045384	43 (0.860)					coding (250/255 nt)	PP_4449	hypothetical protein

ATGAGCTCACTCACCAATTCTTGCCTGGTGGCTTCGGGCAGGGCTGGGTTGCTGCAACGCCACAGCTTCCCTTTTACAACGAAATATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5045185‑5045338 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taggttcgacGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTAGAGTAGGGCAGCTGTCTAGATCTCCATGCTAACGTATCCCCACACACCTGATGGTCGATATTTCGTTGTAAAAGGGAAGCTGTGG  <  NC_002947/5045384‑5045244                                                                                                                                                                                                                                                                                                         ATGAGCTCACTCACCAATTCTTGCCTGGTGGCTTCGGGCAGGGCTGGGTTGCTGCAACGCCACAGCTTCCCTTTTACAACGAAATATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGG                                                                                                                                                     <  4:2730/148‑1               CAATTCTTGCCTGGTGGCTTCGGGCAGGGCTGGGTTGCTGCAACGCCACAGCTTCCCTTTTACAACGAAATATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGA                                                                                                                                                <  3:324969/139‑1               CAATTCTTGCCTGGTGGCTTCGGGCAGGGCTGGGTTGCTGCAACGCCACAGCTTCCCTTTTACAACGAAATATCGACCATCAGGTGTGTGGGGATAAGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGA                                                                                                                                                >  4:324969/1‑139                                                GTTGCTGCAACGCCACAGCTTCCCTTTTACAACGAAATATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAG                                                                                                     >  7:76502/1‑149                                                             CACAGCTTCCCTTTTACAACGAAATATCGACCATCAGGTGTCTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCATACTCTAGGTTCGACGGCTAGCACGGAGCGCCTCAGGAAGAACTTGGCAGAGGAGAGCACTGTCGAAac                                                                                         >  1:132135/1‑146                                                              agAGCTTCCCTTTTACAACGAAATATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTA                                                                                       <  8:76502/147‑1                                                              ACAGATTCCCTTTTACAACGAAATATCGACCATCAGGTGTTTGGTGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGACGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTA                                                                                       <  2:132135/149‑1                                                                                                                                                 TAGGTTCGACGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTAGAGTAGGGCAGCTGTCTAGATCTCCATGCTAACGTATCCCCACACACCTGATGGTCGATATTTCGTTGTAAAAGGGAAGCTGT    <  4:170437/149‑1                                                                                                                                                   GGTTCGACGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTAGAGTAGGGCAGCTGTCTAGATCTCCATGCTAACGTATCCCCACACACCTGATGGTCGATATTTCGTTGTAAAAGGGAAGCTGTG   <  1:120135/148‑1                                                                                                                                                   GGTTCGACGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTAGAGTAGGGCAGCTGTCTAGATCTCCATGCTAACGTATCCCCACACACCTGATGGTCGATATTTCGTTGTAAAAGGGAAGCTGTG   <  7:193389/148‑1                                                                                                                                                    GTTCGACGGCTAGCACGTAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTAGAGTAGGGCAGCTGTCTAGATCTCCATGCTAACGTATCCCCACACACCTGATGGTCGATATTTCGTTGTAAAAGGGAAGCTGTGG  <  8:31096/148‑1                                                                                                                                                    GTTCGACGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTAGAGTAGGGCAGCTGTCTAGATCTCCATGCTAACGTATCCCCACACACCTGATGGTCGATATTTCGTTGTAAAAGGGAAGCTGTGG  <  1:164765/148‑1                                                                                                                                                        GACGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTAGAGTAGGGCAGCTGTCTAGATCTCCATGCTAACGTATCCCCACACACCTGATGGTCGATATTTCGTTGTAAAAGGGAAGCTGTGG  <  3:189814/144‑1                                                                                                                                                        GACGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTAGAGTAGGGCAGCTGTCTAGATCTCCATGCTAACGTATCCCCACACACCTGATGGTCGATATTTCGTTGTAAAAGGGAAGCTGTGG  >  4:189814/1‑144                                                                                                                                                                                                                                                                                                         ATGAGCTCACTCACCAATTCTTGCCTGGTGGCTTCGGGCAGGGCTGGGTTGCTGCAACGCCACAGCTTCCCTTTTACAACGAAATATCGACCATCAGGTGTGTGGGGATACGTTAGCATGGAGATCTAGACAGCTGCCCTACTCTAGGTTCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5045185‑5045338 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taggttcgacGGCTAGCACGGAGCGCCTCAGGAAGAACTGGGCAGCGGAGAGCACTGTCGAACCTAGAGTAGGGCAGCTGTCTAGATCTCCATGCTAACGTATCCCCACACACCTGATGGTCGATATTTCGTTGTAAAAGGGAAGCTGTGG  <  NC_002947/5045384‑5045244

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.