| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5110185 | 33 (0.610) | 3 (0.060) | 3/246 | NT | 8.7% | coding (521/1419 nt) | aroP‑II | aromatic amino acid transport protein |
| ? | NC_002947 | = 5110206 | 32 (0.630) | coding (500/1419 nt) | aroP‑II | aromatic amino acid transport protein | |||||
GGTGAAGCCGAGCATTTCCAGGCCACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGTGTGTCCACAGGTTGGCCACGGTGGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5110037‑5110185‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcagcaTGATCGGCCTGGGTGCCTACCTGCTGACCAGCGGCAGCGGCGGCCCTGAAGCCACCGTGGCCAACCTGTGGACACACGGCGGCTTCTTCCCCAACGGCGTCAGCGGGCTGGTAATGGCCTTGGCTTTCATCATGTTTTCCTTTGGT < NC_002947/5110206‑5110061 GGTGAAGCCGAGCATTTCCAGGCCACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGTGTGTCCACAGGTTGGCCACGGTGGCTTCAGGGCTGCCGCTGCCGCTGGTC < 3:122493/145‑1GGTGAAGCCGAGCATTTCCAGGCCACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGTGTGTCCACAGGTTGGCCACGGTGGCTTCAGGGCAGCCGCTGCCGCTGGTC > 4:122493/1‑145 ACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGTGTGTCCACAGGTTGGCCACGGTGGCTTCAGGGCCGCCGCTGCCGCTGGT > 7:315427/1‑120 ACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGTGTGTCCACAGGTTGGCCACGGTGGCTTCAGGGCCGCCGCTGCCGCTGGT < 8:315427/120‑1 GGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGGCGTTGGGGAAGAAGCCGCCGTGTGTCCACAGGTTGGCCACGGTGGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCATGATCGGCCTGGGTGCCTACCTGCTGACCA < 1:288350/149‑1 GAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGTGTGTCCACAGGTTGGCCACGGTGGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCATGATCGGCCTGGGTGCCTACCTGCTGACCAG > 3:307197/1‑138 GAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGTGTGTCCACAGGTTGGCCACGGTGGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCATGATCGGCCTGGGTGCCTACCTGCTGACCAG < 4:307197/138‑1 GCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGTGTGTCCACAGGTTGGCCACGGTGGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCA > 3:173989/1‑97 GCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGTGTGTCCACAGGTTGGCCACGGTGGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCA < 4:173989/97‑1 TCAGCATGATCGGCCTGGGTGCCTACCTGCTGACCAGCGGCAGCGGCGGCCCTGAAGCCACCGTGGCCAACCTGTGGACACACGGCGGCTTCTTCCCCAACGGCGTCAGCGGGCTGGTAATGGCCTTGGCTTTCATCATGTTTTCCTTT < 4:127419/149‑1 GCATGATCGGCCTGGGTGCCTACCTGCTGACCAGCGGCAGCGGCGGCCCTGAAGCCACCGTGGCCAACCTGTGGACACACGGCGGCTTCTTCCCCAACGGCGTCAGCGGGCTGGTAATGGCCTTGGCTTTCATCATGTTTTCCTTTGGT > 7:91972/1‑149 GGTGAAGCCGAGCATTTCCAGGCCACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGTGTGTCCACAGGTTGGCCACGGTGGCTTCAGGGCCGCCGCTGCCGCTGGTCAGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5110037‑5110185‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtcagcaTGATCGGCCTGGGTGCCTACCTGCTGACCAGCGGCAGCGGCGGCCCTGAAGCCACCGTGGCCAACCTGTGGACACACGGCGGCTTCTTCCCCAACGGCGTCAGCGGGCTGGTAATGGCCTTGGCTTTCATCATGTTTTCCTTTGGT < NC_002947/5110206‑5110061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |