New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5110185	33 (0.610)	3 (0.060)	3/246	NT	8.7%	coding (521/1419 nt)	aroP‑II	aromatic amino acid transport protein
	?	NC_002947	= 5110206	32 (0.630)					coding (500/1419 nt)	aroP‑II	aromatic amino acid transport protein

ACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTGCCGCCGTGACCCAGGTGGGGATCTCCGGCCACCAG  >  NC_002947/5110061‑5110346                                                                                                                                                      |                                                                                                                                             accaAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCAtgc                                                                                                                                           >  7:91972‑M2/1‑146 (MQ=255)    aaaGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCAtgctga                                                                                                                                        <  4:127419‑M2/149‑7 (MQ=255)          aaaCATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGTAGTTGTCAACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGTTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGAt                                                                                                                                    >  1:98459/1‑149 (MQ=255)                gatgaAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCa                                                                                                                            >  6:168236/1‑149 (MQ=255)                gatgaAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCa                                                                                                                            >  5:4819/1‑149 (MQ=255)                      aGCCAATGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCTATCATGCTGACGATGGCGACCACTTtga                                                                                                                      <  7:59569/149‑1 (MQ=255)                      aGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTtga                                                                                                                      >  4:120213/1‑149 (MQ=255)                      aGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTtga                                                                                                                      <  3:120213/149‑1 (MQ=255)                        ccAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTtgatg                                                                                                                    <  3:127419/149‑1 (MQ=255)                        ccAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTtgat                                                                                                                     >  2:98727/1‑148 (MQ=255)                           aGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGatgatg                                                                                                                 <  1:261905/149‑1 (MQ=255)                                          cGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCg                                                                                                  <  5:168236/149‑1 (MQ=255)                                                    tttGGGTATGATGCCGCCGT‑G‑TGTCAAAAGGTTGGCAAGGGTGGTTTATGGGCC‑GCGGCTGCGGCTGGTAAGAAGGTAGGAACCATGTCCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCg                                                                                         <  1:98727/148‑1 (MQ=255)                                                     ttGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCCGGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCg                                                                                         >  1:263406/1‑148 (MQ=255)                                                     ttGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCg                                                                                         >  1:64703/1‑147 (MQ=255)                                                      tGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCAcc                                                                                          <  2:99644/145‑1 (MQ=255)                                                      tGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCACTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCAcc                                                                                          >  1:99644/1‑145 (MQ=255)                                                       ggggAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGAGCACTTTGCTGATGGCGAACCAGAATTCGGCTTCACCgaaga                                                                                     >  6:86525/1‑149 (MQ=255)                                                               agCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACg                                                                             <  2:64703/149‑1 (MQ=255)                                                               agCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACg                                                                             <  2:263406/149‑1 (MQ=255)                                                                       t‑g‑tgtCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAg                                                                     <  6:203734/149‑1 (MQ=255)                                                                           tgtCCACAGTTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGt                                                                   <  6:4819/149‑1 (MQ=255)                                                                              ccACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGa                                                                >  7:276818/1‑149 (MQ=255)                                                                                         ccACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGAt                                                      >  2:112080/1‑148 (MQ=255)                                                                                             ggTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCa                                                 <  2:98459/149‑1 (MQ=255)                                                                                                   ttCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACgaag                                            >  6:329892/1‑148 (MQ=255)                                                                                                                       ctgGTCAGCAGGTAGGCACCCAG‑GCCGATCAtgctgaccagcggcagcggcggccctgaagccaccgtggccaacctgtggacacacggcggcttcttccccaacggcgtcagcgggctggtaatggccttggctttc                                   >  3:307197‑M2/1‑31 (MQ=255)                                                                                                                       ctgGTCAGCAGGTAGGCACCCAG‑GCCGATCAtgctgaccagcggcagcggcggccctgaagccaccgtggccaacctgtggacacacggcggcttcttccccaacggcgtcagcgggctggtaatggccttggctttc                                   <  4:307197‑M2/138‑108 (MQ=255)                                                                                                                        tgGTCAGCAGGTAGGCACCCAG‑GCCGATCAtgctgaccagcggcagcggcggccctgaagccaccgtggccaacctgtggacacacggcggcttcttccccaacgccgtcagcgggctggtaatggccttggctttcatcatgttttcc                       <  1:288350‑M2/149‑120 (MQ=255)                                                                                                                           tCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTgcc                                   <  7:320171/134‑1 (MQ=255)                                                                                                                           tCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTgcc                                   >  8:320171/1‑134 (MQ=255)                                                                                                                               cagGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAAATTCACGTTCATCAGGTTGATGTCGTTGATCAGCACGAAGAAGGATGCAGCCGTGACCCAGGTGGCGa                >  4:323340/1‑149 (MQ=38)                                                                                                                                agGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTGCCGCCGTGACCCAGGTGGGGAt               >  8:255431/1‑149 (MQ=255)                                                                                                                                     ggCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATTTATAATAATTATTCGGCTTCAACGTAGATCTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTGCCGCCGTGACCCAGGTGGGGATCTCCg          <  2:184343/149‑1 (MQ=255)                                                                                                                                       cACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTGCCGCCGTGACCCAGGTGGGGATCTCCGGc        >  2:67455/1‑149 (MQ=255)                                                                                                                                        aCCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTGCCGCCGTGACCCAGGTGGGGATCTCCGGc        >  3:152419/1‑148 (MQ=255)                                                                                                                                          ccAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTGCCGCCGTGACCCAGGTGGGGATCTCCGGccac     <  2:228047/149‑1 (MQ=255)                                                                                                                                             g‑gCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTGCCGCCGTGACCCAGGTGGGGATCTCCGGCCACCag  <  7:255431/149‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                             ACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTGCCGCCGTGACCCAGGTGGGGATCTCCGGCCACCAG  >  NC_002947/5110061‑5110346

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.