New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5110185	33 (0.610)	3 (0.060)	3/246	NT	8.7%	coding (521/1419 nt)	aroP‑II	aromatic amino acid transport protein
	?	NC_002947	= 5110206	32 (0.630)					coding (500/1419 nt)	aroP‑II	aromatic amino acid transport protein

CCGAGCATTTCCAGGCCACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTGCCGCCGTGACCCAGGTGGGGAT  >  NC_002947/5110044‑5110333                                                                                                                                                 |                                                                                                                                                      ccGAGCATTTCCAGGCCACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTa                                                                                                                                                   >  6:115064/1‑146 (MQ=255) ccGAGCATTTCCAGGCCACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTa                                                                                                                                                   <  5:115064/146‑1 (MQ=255)   gAGCATTTCCAGGCCACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCAc                                                                                                                                              >  1:184343/1‑149 (MQ=255)   gAGCATTTCCAGGCCACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCAc                                                                                                                                              >  8:59569/1‑149 (MQ=255)       aTTTCCAGGCCACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAg                                                                                                                                          <  4:231223/149‑1 (MQ=255)           ccAGGCCACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑Gcc                                                                                                                                      <  3:7364/148‑1 (MQ=255)               gCCACCAAAGGAAAACATGATGAAAGCTAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTAAGGGCC‑GCCGCTGCCGCTTGTCAGCAGGTAGGCACCCAC‑GCCGAtaa                                                                                                                                 >  1:191175/1‑147 (MQ=255)                  accaAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGa                                                                                                                                    >  4:104487/1‑143 (MQ=255)                  accaAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGa                                                                                                                                    <  3:104487/143‑1 (MQ=255)                  accaAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCAtgc                                                                                                                              >  7:91972‑M2/1‑146 (MQ=255)                     aaaGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCAtgctga                                                                                                                           <  4:127419‑M2/149‑7 (MQ=255)                        ggAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGGCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAtgatcggcctgggtgcctacctgctgacca                                                                                                                         <  1:288350‑M1/149‑31 (MQ=255)                           aaaCATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGTAGTTGTCAACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGTTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGAt                                                                                                                       >  1:98459/1‑149 (MQ=255)                                 gatgaAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCa                                                                                                               >  5:4819/1‑149 (MQ=255)                                 gatgaAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCa                                                                                                               >  6:168236/1‑149 (MQ=255)                                    gaAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAtgatcggcctgggtgcctacctgctgaccag                                                                                                                        >  3:307197‑M1/1‑107 (MQ=255)                                    gaAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAtgatcggcctgggtgcctacctgctgaccag                                                                                                                        <  4:307197‑M1/138‑32 (MQ=255)                                       aGCCAATGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCTATCATGCTGACGATGGCGACCACTTtga                                                                                                         <  7:59569/149‑1 (MQ=255)                                       aGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTtga                                                                                                         <  3:120213/149‑1 (MQ=255)                                       aGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTtga                                                                                                         >  4:120213/1‑149 (MQ=255)                                         ccAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTtgatg                                                                                                       <  3:127419/149‑1 (MQ=255)                                         ccAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTtgat                                                                                                        >  2:98727/1‑148 (MQ=255)                                            aGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGatgatg                                                                                                    <  1:261905/149‑1 (MQ=255)                                              gCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCA                                                                                                                                                       >  3:173989‑M1/1‑97 (MQ=255)                                              gCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCA                                                                                                                                                       <  4:173989‑M1/97‑1 (MQ=255)                                                           cGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCg                                                                                     <  5:168236/149‑1 (MQ=255)                                                                     tttGGGTATGATGCCGCCGT‑G‑TGTCAAAAGGTTGGCAAGGGTGGTTTATGGGCC‑GCGGCTGCGGCTGGTAAGAAGGTAGGAACCATGTCCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCg                                                                            <  1:98727/148‑1 (MQ=255)                                                                      ttGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCCGGCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCg                                                                            >  1:263406/1‑148 (MQ=255)                                                                      ttGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCg                                                                            >  1:64703/1‑147 (MQ=255)                                                                       tGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCAcc                                                                             <  2:99644/145‑1 (MQ=255)                                                                       tGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCACTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCAcc                                                                             >  1:99644/1‑145 (MQ=255)                                                                        ggggAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGAGCACTTTGCTGATGGCGAACCAGAATTCGGCTTCACCgaaga                                                                        >  6:86525/1‑149 (MQ=255)                                                                                agCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACg                                                                <  2:263406/149‑1 (MQ=255)                                                                                agCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACg                                                                <  2:64703/149‑1 (MQ=255)                                                                                        t‑g‑tgtCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAg                                                        <  6:203734/149‑1 (MQ=255)                                                                                            tgtCCACAGTTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGt                                                      <  6:4819/149‑1 (MQ=255)                                                                                               ccACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGa                                                   >  7:276818/1‑149 (MQ=255)                                                                                                          ccACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGAt                                         >  2:112080/1‑148 (MQ=255)                                                                                                              ggTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCa                                    <  2:98459/149‑1 (MQ=255)                                                                                                                    ttCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACgaag                               >  6:329892/1‑148 (MQ=255)                                                                                                                                        ctgGTCAGCAGGTAGGCACCCAG‑GCCGATCAtgctgaccagcggcagcggcggccctgaagccaccgtggccaacctgtggacacacggcggcttcttccccaacggcgtcagcgggctggtaatggccttggctttc                      >  3:307197‑M2/1‑31 (MQ=255)                                                                                                                                        ctgGTCAGCAGGTAGGCACCCAG‑GCCGATCAtgctgaccagcggcagcggcggccctgaagccaccgtggccaacctgtggacacacggcggcttcttccccaacggcgtcagcgggctggtaatggccttggctttc                      <  4:307197‑M2/138‑108 (MQ=255)                                                                                                                                         tgGTCAGCAGGTAGGCACCCAG‑GCCGATCAtgctgaccagcggcagcggcggccctgaagccaccgtggccaacctgtggacacacggcggcttcttccccaacgccgtcagcgggctggtaatggccttggctttcatcatgttttcc          <  1:288350‑M2/149‑120 (MQ=255)                                                                                                                                            tCAGCAtgatcggcctgggtgcctacctgctgaccagcggcagcggcggccctgaagccaccgtggccaacctgtggacacacggcggcttcttccccaacggcgtcagcgggctggtaatggccttggctttcatcatgttttccttt        <  4:127419‑M1/149‑144 (MQ=255)                                                                                                                                            tCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTgcc                      <  7:320171/134‑1 (MQ=255)                                                                                                                                            tCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTgcc                      >  8:320171/1‑134 (MQ=255)                                                                                                                                               gCAtgatcggcctgggtgcctacctgctgaccagcggcagcggcggccctgaagccaccgtggccaacctgtggacacacggcggcttcttccccaacggcgtcagcgggctggtaatggccttggctttcatcatgttttcctttggt     >  7:91972‑M1/1‑3 (MQ=255)                                                                                                                                                cagGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAAATTCACGTTCATCAGGTTGATGTCGTTGATCAGCACGAAGAAGGATGCAGCCGTGACCCAGGTGGCGa   >  4:323340/1‑149 (MQ=38)                                                                                                                                                 agGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTGCCGCCGTGACCCAGGTGGGGAt  >  8:255431/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                      CCGAGCATTTCCAGGCCACCAAAGGAAAACATGATGAAAGCCAAGGCCATTACCAGCCCGCTGACGCCGTTGGGGAAGAAGCCGCCGT‑G‑TGTCCACAGGTTGGCCACGGTGGCTTCAGGGCC‑GCCGCTGCCGCTGGTCAGCAGGTAGGCACCCAG‑GCCGATCATGCTGACGATGGCGACCACTTTGATGATGGCGAACCAGAATTCGGCTTCACCGAAGAACTTCACGTTCATCAGGTTGATGGCGTTGATCAGCACGAAGAAGGCTGCCGCCGTGACCCAGGTGGGGAT  >  NC_002947/5110044‑5110333

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.