| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5269812 = | 40 (0.740) | 3 (0.060) | 3/248 | NT | 7.1% | coding (527/1371 nt) | radA | DNA repair enzyme |
| ? | NC_002947 | 5269874 = | 40 (0.780) | coding (465/1371 nt) | radA | DNA repair enzyme | |||||
GGCCATGCGCTCGCGGCGGCTGGGCCTACCCCAGGACCAACTCAAGGTGATGACCGAAACCTGCATCGAGACGATCATTGCCACGGCGCGGGTCGAGAAGCCGCGGGTAATGGTGATCGACTCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5269937‑5269812‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgatGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTC > NC_002947/5269874‑5270021 GGCCATGCGCTCGCGGCGGCTGGGCCTACCCCAGGACCAACTCAAGGTGATGACCGAAACCTGCATCGAGACGATCATTGCCACGGCGCGGGTCGAGAAGCCGCGGGTAATGGTGATCGACT > 5:145963/1‑122GGCCATGCGCTCGCGGCGGCTGGGCCTACCCCAGGACCAACTCAAGGTGATGACCGAAACCTGCATCGAGACGATCATTGCCACGGCGCGGGTCGAGAAGCCGCGGGTAATGGTGATCGACT < 6:145963/122‑1 CTGCATCGAGACGATCATTGCCACGGCGCGGGTCGAGAAGCCGCGGGTAATGGTGATCGACTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGA > 3:203131/1‑144 CTGCATCGAGACGATCATTGCCACGGCGCGGGTCGAGAAGCCGCGGGTAATGGTGATCGACTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGA < 4:203131/144‑1 GAGACGATCATTGCCACGGCGCGGGTCGAGAAGCCGCGGGTAATGGTGATCGACTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGT > 6:172334/1‑149 CGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGATGCACAAGGTCTGTAGCAAAATG < 8:147306/149‑1 GATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATG < 1:176210/148‑1 TGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTC < 5:172334/149‑1 GGCCATGCGCTCGCGGCGGCTGGGCCTACCCCAGGACCAACTCAAGGTGATGACCGAAACCTGCATCGAGACGATCATTGCCACGGCGCGGGTCGAGAAGCCGCGGGTAATGGTGATCGACTCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5269937‑5269812‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctcgatGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTC > NC_002947/5269874‑5270021 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |