New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5269812 =	40 (0.740)	3 (0.060)	3/248	NT	7.1%	coding (527/1371 nt)	radA	DNA repair enzyme
	?	NC_002947	5269874 =	40 (0.780)					coding (465/1371 nt)	radA	DNA repair enzyme

GCCAGCGAGCCCTCCTTGGTCACGTGGCCGACCAGGAAGATTGCCGTACCGCTTT‑GCTTGGCATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCC  >  NC_002947/5269665‑5269959                                                                                                                                                     |                                                                                                                                                    gaccattttgctacagaccttgtgcaacattgccgtgggcatgccggccctgtatgtcacgggggaggagtcgcagcagcaggtggccatgcgctcgcggcggctgggcctaccccaggaccaactcaaggtgatgaccgaaacctgca                                                                                                                                                     <  5:172334‑M1/1‑1 (MQ=255)  ccagcGAGCCCTCCTTGGTCACGTGGCCGACCAGGAAGATTGCCGTACCGCTTTGGCTTGGCATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGAt                                                                                                                                                    >  1:95005/1‑149 (MQ=255)  ccagcGAGCCCTCCTTGGTCACGTGGCCGACCAGGAAGATTGCCGTACCGCTTT‑GCTTGGCATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATc                                                                                                                                                   <  2:281079/149‑1 (MQ=255)    cattttgctacagaccttgtgcatcattgccgtgggcatgccggccctgtatgtcacgggggaggagtcgcagcagcaggtggccatgcgctcgcggcggctgggcctaccccaggaccaactcaaggtgatgaccgaaacctgcATCg                                                                                                                                                  <  8:147306‑M1/4‑1 (MQ=255)    cattttgctacagaccttgtgcaacattgccgtgggcatgccggccctgtatgtcacgggggaggagtcgcagcagcaggtggccatgcgctcgcggcggctgggcctaccccaggaccaactcaaggtgatgaccgaaacctgcATc                                                                                                                                                   <  1:176210‑M1/3‑1 (MQ=255)      cGAGCCCTCCTTGGTCACGTGGCCGACCAGGAAGATTGCCGTACCGCTTT‑GCTTGGCATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGt                                                                                                                                               <  6:189535/149‑1 (MQ=255)             tcctTGGTCACGTGGCCGACCAGGAAGATTGCCGTACCGCTTT‑GCTTGGCATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCAc                                                                                                                                        >  6:220333/1‑149 (MQ=255)                            ccGACCAGGAAGATTGCCGTACCGCTTT‑GCTTGGCATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCtt                                                                                                                         >  3:262109/1‑149 (MQ=255)                                  aGGAAGATTGCCGTACCGCTTT‑GCTTGGCGTAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCAc                                                                                                                                        <  5:220323/128‑1 (MQ=255)                                  aGGAAGATTGCCGTACCGCTTT‑GCTTGGCGTAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCAc                                                                                                                                        >  6:220323/1‑128 (MQ=255)                                    gAAGATTGCCGTACCGCTTT‑GCTTGGCATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGAccc                                                                                                                 <  2:95005/149‑1 (MQ=255)                                       gATTGCCGTACCGCTTT‑GCTTGGCATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGt                                                                                                                                               <  6:10081/116‑1 (MQ=255)                                       gATTGCCGTACCGCTTT‑GCTTGGCATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGt                                                                                                                                               >  5:10081/1‑116 (MQ=255)                                            ccGTACCGCTTT‑GCTTGGCATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTg                                                                                                         <  8:287017/149‑1 (MQ=255)                                               tACCGCTTT‑GCTTGGCATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGc                                                                                                       >  3:292139/1‑148 (MQ=255)                                                aCCGCTTT‑GCTTGGCATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCaa                                                                                                     >  4:101308/1‑149 (MQ=255)                                                           acgggggaggagtcgcagcagcaggtggccatgcgctcgcggcggctgggcctaccccaggaccaactcaaggtgatgaccgaaacctgcATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGtctc                                                                                           >  6:172334‑M1/91‑149 (MQ=255)                                                                 tAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCa                                                                                     <  6:62244/149‑1 (MQ=255)                                                                   gcgcACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAg                                                                                    <  4:139680/148‑1 (MQ=255)                                                                   gcgcACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAg                                                                                    <  8:287556/148‑1 (MQ=255)                                                                      cACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGttt                                                                                <  4:292139/149‑1 (MQ=255)                                                                       tcgcagcagcaggtggccatgcgctcgcggcggctgggcctaccccaggaccaactcaaggtgatgaccgaaacctgcATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAg                                                                                    >  3:203131‑M1/79‑144 (MQ=255)                                                                       tcgcagcagcaggtggccatgcgctcgcggcggctgggcctaccccaggaccaactcaaggtgatgaccgaaacctgcATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAg                                                                                    <  4:203131‑M1/66‑1 (MQ=255)                                                                         cAGCACCGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCGCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGCCCCGCGCCGAGGCAAAGATCGTCGCGATGCCGCTTTCgg                                                                             >  5:228494/1‑149 (MQ=255)                                                                                gCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCAc                                                                      >  3:239730/1‑149 (MQ=255)                                                                                    tgCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCt                                                                    <  4:330422/147‑1 (MQ=255)                                                                                      cTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTtct                                                                                                                       >  7:191721/1‑94 (MQ=255)                                                                                      cTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTtct                                                                                                                       <  8:191721/94‑1 (MQ=255)                                                                                       tttCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGtcatca                                                                       >  8:23421/1‑141 (MQ=255)                                                                                       tttCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGtcatca                                                                       <  7:23421/141‑1 (MQ=255)                                                                                           gcgcACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAg                                                                <  7:65583/144‑1 (MQ=255)                                                                                           gcgcACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAg                                                                >  8:65583/1‑144 (MQ=255)                                                                                                ccTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTgg                                                      <  5:220333/149‑1 (MQ=255)                                                                                                   gggCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTgggg                                                    >  4:41997/1‑148 (MQ=255)                                                                                                     gCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGtc                                                                           >  5:340104/1‑123 (MQ=255)                                                                                                     gCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGtc                                                                           <  6:340104/123‑1 (MQ=255)                                                                                                     gCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAg                                                 >  5:106028/1‑149 (MQ=255)                                                                                                     gCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAg                                                 <  4:262109/149‑1 (MQ=255)                                                                                                       cACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGc                                               >  2:55965/1‑149 (MQ=255)                                                                                                        aCGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGcc                                              <  1:55965/149‑1 (MQ=255)                                                                                                          gccgccCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTg                                                                  >  8:225140/1‑127 (MQ=255)                                                                                                          gccgccCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTgg                                                      >  6:44264/1‑139 (MQ=255)                                                                                                          gccgccCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTgg                                                      <  5:44264/139‑1 (MQ=255)                                                                                                                   ggCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCcgcg                                   >  7:147306/1‑149 (MQ=255)                                                                                                                                  cTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACct                    >  1:258261/1‑149 (MQ=255)                                                                                                                                     ggTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACctgct                 >  7:8307/1‑149 (MQ=255)                                                                                                                                     ggTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACctg                   <  4:239730/147‑1 (MQ=255)                                                                                                                                               gTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGActc       <  3:41997/149‑1 (MQ=255)                                                                                                                                                    gATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCtgctgctgc            <  4:147130/139‑1 (MQ=255)                                                                                                                                                    gATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCtgctgctgc            >  3:147130/1‑139 (MQ=255)                                                                                                                                                    gATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGActcctc    <  8:8307/147‑1 (MQ=255)                                                                                                                                                    gATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTccc  <  3:101308/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                    GCCAGCGAGCCCTCCTTGGTCACGTGGCCGACCAGGAAGATTGCCGTACCGCTTT‑GCTTGGCATAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCC  >  NC_002947/5269665‑5269959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.