New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5269812 =	40 (0.740)	3 (0.060)	3/248	NT	7.1%	coding (527/1371 nt)	radA	DNA repair enzyme
	?	NC_002947	5269874 =	40 (0.780)					coding (465/1371 nt)	radA	DNA repair enzyme

TAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTC  >  NC_002947/5269728‑5270021                                                                                                                                                   |                                                                                                                                                    tAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCa                                                                                                                                                   <  6:62244/149‑1 (MQ=255)   gcgcACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAg                                                                                                                                                  <  4:139680/148‑1 (MQ=255)   gcgcACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAg                                                                                                                                                  <  8:287556/148‑1 (MQ=255)      cACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGttt                                                                                                                                              <  4:292139/149‑1 (MQ=255)       tcgcagcagcaggtggccatgcgctcgcggcggctgggcctaccccaggaccaactcaaggtgatgaccgaaacctgcATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAg                                                                                                                                                  <  4:203131‑M1/66‑1 (MQ=255)       tcgcagcagcaggtggccatgcgctcgcggcggctgggcctaccccaggaccaactcaaggtgatgaccgaaacctgcATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAg                                                                                                                                                  >  3:203131‑M1/79‑144 (MQ=255)         cAGCACCGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCGCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGCCCCGCGCCGAGGCAAAGATCGTCGCGATGCCGCTTTCgg                                                                                                                                           >  5:228494/1‑149 (MQ=255)                gCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCAc                                                                                                                                    >  3:239730/1‑149 (MQ=255)                    tgCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCt                                                                                                                                  <  4:330422/147‑1 (MQ=255)                       tttCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGtcatca                                                                                                                                     >  8:23421/1‑141 (MQ=255)                       tttCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGtcatca                                                                                                                                     <  7:23421/141‑1 (MQ=255)                           gcgcACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAg                                                                                                                              >  8:65583/1‑144 (MQ=255)                           gcgcACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAg                                                                                                                              <  7:65583/144‑1 (MQ=255)                                ccTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTgg                                                                                                                    <  5:220333/149‑1 (MQ=255)                                   gggCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTgggg                                                                                                                  >  4:41997/1‑148 (MQ=255)                                     gCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGtc                                                                                                                                         <  6:340104/123‑1 (MQ=255)                                     gCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGtc                                                                                                                                         >  5:340104/1‑123 (MQ=255)                                     gCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAg                                                                                                               <  4:262109/149‑1 (MQ=255)                                     gCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAg                                                                                                               >  5:106028/1‑149 (MQ=255)                                       cACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGc                                                                                                             >  2:55965/1‑149 (MQ=255)                                        aCGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGcc                                                                                                            <  1:55965/149‑1 (MQ=255)                                          gccgccCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTg                                                                                                                                >  8:225140/1‑127 (MQ=255)                                          gccgccCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTgg                                                                                                                    <  5:44264/139‑1 (MQ=255)                                          gccgccCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTgg                                                                                                                    >  6:44264/1‑139 (MQ=255)                                                   ggCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCcgcg                                                                                                 >  7:147306/1‑149 (MQ=255)                                                                  cTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACct                                                                                  >  1:258261/1‑149 (MQ=255)                                                                     ggTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACctgct                                                                               >  7:8307/1‑149 (MQ=255)                                                                     ggTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACctg                                                                                 <  4:239730/147‑1 (MQ=255)                                                                               gTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGActc                                                                     <  3:41997/149‑1 (MQ=255)                                                                                 ctgcatcgagacgatcattgccacggcgcgggtcgagaagccgcgggtaatggtgatcgactcgatGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGa                                                                        >  3:203131‑M2/67‑144 (MQ=255)                                                                                 ctgcatcgagacgatcattgccacggcgcgggtcgagaagccgcgggtaatggtgatcgactcgatGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGa                                                                        <  4:203131‑M2/78‑1 (MQ=255)                                                                                    gATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCtgctgctgc                                                                          >  3:147130/1‑139 (MQ=255)                                                                                    gATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCtgctgctgc                                                                          <  4:147130/139‑1 (MQ=255)                                                                                    gATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGActcctc                                                                  <  8:8307/147‑1 (MQ=255)                                                                                    gATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTccc                                                                <  3:101308/149‑1 (MQ=255)                                                                                        gagacgatcattgccacggcgcgggtcgagaagccgcgggtaatggtgatcgactcgatGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGt                                                            >  6:172334‑M2/60‑149 (MQ=255)                                                                                         AGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGcc                                                                                      <  6:145963‑M1/122‑1 (MQ=255)                                                                                         AGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGcc                                                                                      >  5:145963‑M1/1‑122 (MQ=255)                                                                                                  ccATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAgg                                                  <  6:106028/149‑1 (MQ=255)                                                                                                   cgttACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACa                                                        <  2:221326/140‑1 (MQ=255)                                                                                                   cATTACCCGCGGCTTCTCGACCCGCTCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATagatcg                                                 >  1:221326/1‑144 (MQ=255)                                                                                                   cATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCtcctgctgc                                                                          >  4:46890/1‑124 (MQ=255)                                                                                                   cATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAggg                                                 >  3:227481/1‑149 (MQ=255)                                                                                                    aTTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGc                                                >  2:176210/1‑149 (MQ=255)                                                                                                         ccGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCa                                           >  1:216655/1‑149 (MQ=255)                                                                                                               cTTCTCGCGCCGCGCCGTCGCAATGTTCGTGTCGATGCAGGTTTCGGTGATCACCTTGAGGTGGGCCTGGGGTAGGCCCAGCCTCCGCGTGCGCATGGCCAGCTTCTGCTGCGACTCCTCCCCCGTGACATACAGTGCCGGCATGccaa                                     <  6:228494/149‑3 (MQ=255)                                                                                                                       cccGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATg                             >  6:30749/1‑149 (MQ=255)                                                                                                                                  gCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGt                  >  5:324571/1‑149 (MQ=255)                                                                                                                                    aaTGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCt                >  4:306324/1‑149 (MQ=255)                                                                                                                                    aaTGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCt                >  2:108872/1‑149 (MQ=255)                                                                                                                                        aTCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTa             <  6:324571/148‑1 (MQ=255)                                                                                                                                               cgatGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGATGCACAAGGTCTGTAGCAAAATg     <  8:147306‑M2/145‑1 (MQ=255)                                                                                                                                                gatGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATg     <  1:176210‑M2/145‑1 (MQ=255)                                                                                                                                                  tGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTc  <  5:172334‑M2/148‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                    TAGCGCACCAGCAACGCTGTGCTTTCGCGCACCTGGGCCACGCCGCCCGGGGCCGATTGCAACTGCTCGGTGAAAATGGTCTGGATCGAGTCGATCACCATTACCCGCGGCTTCTCGACCCGCGCCGTGGCAATGATCGTCTCGATGCAGGTTTCGGTCATCACCTTGAGTTGGTCCTGGGGTAGGCCCAGCCGCCGCGAGCGCATGGCCACCTGCTGCTGCGACTCCTCCCCCGTGACATACAGGGCCGGCATGCCCACGGCAATGTTGCACAAGGTCTGTAGCAAAATGGTC  >  NC_002947/5269728‑5270021

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.