New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5282008 =	64 (1.180)	4 (0.080)	4/252	NT	6.0%	coding (333/720 nt)	pcaH	protocatechuate 3,4‑dioxygenase subunit beta
	?	NC_002947	5282050 =	63 (1.200)					coding (291/720 nt)	pcaH	protocatechuate 3,4‑dioxygenase subunit beta

CCATGACCTGCTGCTGAACTTCAATAACGGTGGCCTGCCCATTGGCGAGCGCATCATCGTCGCCGGCCGTGTCGTCGACCAGTACGGCAAGCCTGTGCCGAACACTTTGGTGGAGATG‑TGGCAAGCCAACGCCGGCGGCCGCTATCGCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5282158‑5282008 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacCAAAGTGTTCGGCACAGGCTTGCCGTACTGGTCGACGACACGGCCGGCGACGATGATGCGCTCGCCAATGGGCAGGCCACCGTTATTGAAGTTCAGCAGCAGGTCATGGTCGTGGGCGCCGAAGCCCAGATGGGAAAAGTCCGGAC  >  NC_002947/5282050‑5282195                                                                                                                                                                                                                                                                                                            CCATGACCTGCTGCTGAACTTCAATAACGGTGGCCTGCCCATTGGCGAGCGCATCATCGTCGCCGGCCGTGTCGTCGACCAGTACGGCAAGCCTGTGCCGAACACTTTGGTGGAGATGATGGCAAGCCAACGCCGGCGGCCGCTATCGC                                                                                                                                                       <  1:31551/149‑1                                                                                                            TGGTGGAGATG‑TGGCAAGCCAACGCCGGCGGCCGCTATCGCCACCAAAGTGTTCGGCACAGGCTTGCCGTACTGGTCGACGACACGGCCGGCGACGATGATGCGCTCGCCAATGGGCAGGCCACCGTTATTGAAGTTCAGCAGCAGGT                                            >  8:35159/1‑148                                                                                                             GGTGGAGATG‑TGGCAAGCCAACGCCGGCGGCCGCTATCGCCACCAAAGTGTTCGGCACAGGCTTGCCGTACTGGTCGACGACACGGCCGGCGACGATGATGCGCTCGCCAATGGGCAGGCCACCGTTATTGAAGTTCAGCAGCAGGTCA                                          >  2:146518/1‑149                                                                                                               TGGAGATG‑TGGCAAGCCAACGCCGGCGGCCGCTATCGCCACCAAAGTGTTCGGCACAGGCTTGCCGTACTGGTCGACGACACGGCCGGCGACGATGATGCGCTCGCCAATGGGCAGGCCACCGTTATTGAAGTTCAGCAGCAGGTCATG                                        <  7:35159/149‑1                                                                                                                                       GGCGGCCGCTATCGCCACCAAAGTGTTCGGCACAGGCTTGCCGTACTGGTCGACGACACGGCCGGCGACGATGATGCGCTCGCCAATGGGCAGGCCACCGTTATTGAAGTTCAGCAGCAGGTCATGGTCGTGGGCGCCGAAGCCCAGAT                 <  1:146518/149‑1                                                                                                                                                      ccCCAAAGTGTTCGGCACAGGCTTTCCGTACTGGTCGACGTCACGGCCGGCGACGATGTTGCGCTCGCCAATGGGCAGGCCACCGTTATTGAAGTTCAGCAGCAGGTCATGGTGGTGGGCGCCGAAGCGCAGATGGGAAAAGTCCGGA   <  4:22558/146‑1                                                                                                                                                      CACCAAAGTGTTCGGCACAGGCTTGCCGTACTGGTCGACGACACGGCCGGCGACGATGATGCGCTCGCCAATGGGCAGGCCACCGTTATTGAAGTTCAGCAGCAGGTCATGGTCGTGGGCGCCGAAGCCCAGATGGGAAAAGTCCGGAC  >  5:37907/1‑149                                                                                                                                                      CACCAAAGTGTTCGGCACAGGCTTGCCGTACTGGTCGACGACACGGCCGGCGACGATGATGCGCTCGCCAATGGGCAGGCCACCGTTATTGAAGTTCAGCAGCAGGTCATGGTCGTGGGCGCCGAAGCCCAGATGGGAAAAGTCC      <  4:96597/145‑1                                                                                                                                                                                                                                                                                                            CCATGACCTGCTGCTGAACTTCAATAACGGTGGCCTGCCCATTGGCGAGCGCATCATCGTCGCCGGCCGTGTCGTCGACCAGTACGGCAAGCCTGTGCCGAACACTTTGGTGGAGATG‑TGGCAAGCCAACGCCGGCGGCCGCTATCGCCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5282158‑5282008 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccacCAAAGTGTTCGGCACAGGCTTGCCGTACTGGTCGACGACACGGCCGGCGACGATGATGCGCTCGCCAATGGGCAGGCCACCGTTATTGAAGTTCAGCAGCAGGTCATGGTCGTGGGCGCCGAAGCCCAGATGGGAAAAGTCCGGAC  >  NC_002947/5282050‑5282195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.