| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5381441 = | 36 (0.670) | 6 (0.120) | 5/240 | NT | 15.0% | coding (408/549 nt) | PP_4732 | hypothetical protein |
| ? | NC_002947 | 5381486 = | 35 (0.700) | coding (363/549 nt) | PP_4732 | hypothetical protein | |||||
TGCGTGCCAAGCTCGAAGTGGCCAAGGGTGGCATGAGCCAGCACTTCGTGACGCGTAACGTGCTGGTGCCGGGGCAGTCCATCGAAATGAACCTCGAAGAAGGGCCGTTCACCCAGCTGCATGGTGTTTGGGTGTTCAAGCCGCTGGGTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5381592‑5381441‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggtgaaCGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATCACCGTCGAGGCCGAGC > NC_002947/5381486‑5381631 TGCGTGCCAAGCTCGAAGTGGCCAAGGGTGGCATGAGCCAGCGCTTCGTGACGCGTAACGTGCTGGTGCCGGGGCAGTCCATCGAAATGAACCTCGAAGAAGGGCCGTTCACCCAGCTGCATGGTGTTTGGGTGTTCAAGCCGCTGGGT < 8:230404/149‑1 GTTCACCCAGCTGCATGGTGTTTGGGTGTTCAAGCCGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCTCCCTTGGCCACTTCGAGCTTGGCA > 3:167336/1‑149 GTTCACCCAGCTGCATGGTGTTTGGGTGTTCAAGCCGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCA > 3:52753/1‑125 GTTCACCCAGCTGCATGGTGTTTGGGTGTTCAAGCCGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCA < 4:52753/125‑1 ACCCAGCTGCATGGTGTTTGGGTGTTCAAGCCGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCA > 6:132547/1‑149 CCCAGCTGCATGGTGTTTGGGTGTTCAAGCCGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCAT < 5:132547/149‑1 TGTTCAAGCCGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCTCCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGAT < 4:167336/149‑1 GGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATCACCGTCGAGGCC < 3:5863/148‑1 AACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGT > 7:139155/1‑114 AACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGT < 8:139155/114‑1 AACGGCCCTTCTTCGAGGTTCATTTCGACGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATCACCGTCGAGGCCGAGC < 8:262377/148‑1 TGCGTGCCAAGCTCGAAGTGGCCAAGGGTGGCATGAGCCAGCACTTCGTGACGCGTAACGTGCTGGTGCCGGGGCAGTCCATCGAAATGAACCTCGAAGAAGGGCCGTTCACCCAGCTGCATGGTGTTTGGGTGTTCAAGCCGCTGGGTGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5381592‑5381441‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctgggtgaaCGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATCACCGTCGAGGCCGAGC > NC_002947/5381486‑5381631 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |