| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5381441 = | 36 (0.670) | 6 (0.120) | 5/240 | NT | 15.0% | coding (408/549 nt) | PP_4732 | hypothetical protein |
| ? | NC_002947 | 5381486 = | 35 (0.700) | coding (363/549 nt) | PP_4732 | hypothetical protein | |||||
ATACGTCAGGCATTCAATTGCTTGGCACGCTGGCAGAACGCATCGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTC > NC_002947/5381295‑5381578 | gctcggcctcgacggtgatcgaaaccagcgatacacacatgcgtgccaagctcgaagtggccaagggtggcatgagccagcacttcgtgacgcgtaacgtgctggtgccggggcagtccgtcgaaatgaacctcgaagaagggccgtt < 8:262377‑M1/2‑1 (MQ=255)ataCGTCAGGCATTCAATTGCTTGGCACGCTGGCAGAACGCATCGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCtttt < 8:186375/147‑1 (MQ=255)ataCGTCAGGCATTCAATTGCTTGGCACGCTGGCAGAACGCATCGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCtttt < 2:145337/147‑1 (MQ=255) ggcctcgacggtgatcgaaaccagcgatacacacatgcgtgccaagctcgaagtggccaagggtggcatgagccagcacttcgtgacgcgtaacgtgctggtgccggggcagtccatcgaaatgaacctcgaagaagggccgTTCAcc < 3:5863‑M1/6‑1 (MQ=255) aTTCAATTGCTTGGCACGCTGGCAGAACGCATCGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCt > 5:233178/1‑149 (MQ=255) ttCAATTGCTTGGCACGCTGGCAGAACGCATCGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCtt > 6:124688/1‑149 (MQ=255) aaTTGCTTGGCACGCTGGCAGAACGCATCGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGaa > 3:52812/1‑149 (MQ=255) atcgaaaccagcgatacacacatgcgtgccaagctcgaagtggccaagggaggcatgagccagcacttcgtgacgcgtaacgtgctggtgccggggcagtccatcgaaatgaacctcgaagaagggccgTTCACCCAGCGGCTTGAaca < 4:167336‑M1/20‑1 (MQ=255) tGCTTGGCACGCTGGCAGAACGCATCGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTg > 3:245182/1‑144 (MQ=255) tGCTTGGCACGCTGGCAGAACGCATCGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTg < 4:245182/144‑1 (MQ=255) gCACGCTGGCAGAACGCATCGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCaaa < 3:1013/148‑1 (MQ=255) gCACGCTGGCAGAACGCATCGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCaaa > 4:5863/1‑148 (MQ=255) gCACGCTGGCAGAACGCATCGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCaaa < 4:255500/148‑1 (MQ=255) acacatgcgtgccaagctcgaagtggccaagggtggcatgagccagcacttcgtgacgcgtaacgtgctggtgccggggcagtccatcgaaatgaacctcgaagaagggccgtt < 8:139155‑M1/2‑1 (MQ=255) acacatgcgtgccaagctcgaagtggccaagggtggcatgagccagcacttcgtgacgcgtaacgtgctggtgccggggcagtccatcgaaatgaacctcgaagaagggccgtt > 7:139155‑M1/113‑114 (MQ=255) aCGCATCGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGGAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTgg < 5:30182/149‑1 (MQ=255) atgcgtgccaagctcgaagtggccaagggtggcatgagccagcacttcgtgacgcgtaacgtgctggtgccggggcagtccatcgaaatgaacctcgaagaagggccgTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTggg < 5:132547‑M1/41‑1 (MQ=255) tgcgtgccaagctcgaagtggccaagggtggcatgagccagcacttcgtgacgcgtaacgtgctggtgccggggcagtccatcgaaatgaacctcgaagaagggccgTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGt > 6:132547‑M1/108‑149 (MQ=255) tCGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGaa < 3:113391/149‑1 (MQ=255) tgccaagctcgaagtggccaagggaggcatgagccagcacttcgtgacgcgtaacgtgctggtgccggggcagtccatcgaaatgaacctcgaagaagggccgTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAAc > 3:167336‑M1/104‑149 (MQ=255) aCCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACgg > 6:45772/1‑149 (MQ=255) cAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCCCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGcc > 4:93593/1‑149 (MQ=255) aGCGTATTCGCCGCCTGATTGAATAGCTGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGccc < 3:10325/149‑1 (MQ=255) gccgccTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGa < 5:45772/148‑1 (MQ=255) aTTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAaca > 6:270689/1‑109 (MQ=255) aTTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAaca < 5:270689/109‑1 (MQ=255) aTTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGTTCAtt < 6:233178/148‑1 (MQ=255) tggcatgagccagcacttcgtgacgcgtaacgtgctggtgccggggcagtccatcgaaatgaacctcgaagaagggccgTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAAc < 4:52753‑M1/46‑1 (MQ=255) tggcatgagccagcacttcgtgacgcgtaacgtgctggtgccggggcagtccatcgaaatgaacctcgaagaagggccgTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAAc > 3:52753‑M1/80‑125 (MQ=255) aaTAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGc > 7:11678/1‑111 (MQ=255) aaTAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGc < 8:11678/111‑1 (MQ=255) aaTAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGAt > 5:303310/1‑149 (MQ=255) ggCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGc < 8:270624/149‑1 (MQ=255) ccAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCg < 7:227431/125‑1 (MQ=255) ccAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCg > 8:227431/1‑125 (MQ=255) ccAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGtt > 2:312630/1‑130 (MQ=255) ccAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGtt < 1:312630/130‑1 (MQ=255) gcgcgcACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAg < 6:303310/149‑1 (MQ=255) gcgcgcACAATCGGCCCGGCATAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCa < 8:12036/148‑1 (MQ=255) aaTCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTAc > 1:154640/1‑149 (MQ=255) cGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGccc > 7:199743/1‑124 (MQ=255) cGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGccc < 8:199743/124‑1 (MQ=255) cGGCGAAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCATGAACACACAAACAACATGCAGCTGGGTGAACGGCCCTTATTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCAc > 5:241089/1‑148 (MQ=255) gTCCAGGCTGATCTTGAAGGCTTTTTCCCCCAGCGGCTTGAACACACAAACAACATGCAGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGAGCTGGCTCATGcccc > 2:229822/1‑147 (MQ=255) ggCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGTGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATTCCACCCTTg < 3:93593/149‑1 (MQ=255) tCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACt > 2:192777/1‑149 (MQ=255) gCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACtt < 1:192777/146‑1 (MQ=255) gCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTc < 5:124688/147‑1 (MQ=255) | ATACGTCAGGCATTCAATTGCTTGGCACGCTGGCAGAACGCATCGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCGAGGTTCATTTCGATGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTC > NC_002947/5381295‑5381578 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |