New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5381441 =	36 (0.670)	6 (0.120)	5/240	NT	15.0%	coding (408/549 nt)	PP_4732	hypothetical protein
	?	NC_002947	5381486 =	35 (0.700)					coding (363/549 nt)	PP_4732	hypothetical protein

CGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATCACCGTCGAGGCCGAGCACC  >  NC_002947/5381338‑5381634                                                                                                                                                     |                                                                                                                                                       tgccaagctcgaagtggccaagggaggcatgagccagcacttcgtgacgcgtaacgtgctggtgccggggcagtccatcgaaatgaacctcgaagaagggccgTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAAc                                                                                                                                                        >  3:167336‑M1/104‑149 (MQ=255)   aCCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACgg                                                                                                                                                      >  6:45772/1‑149 (MQ=255)     cAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCCCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGcc                                                                                                                                                    >  4:93593/1‑149 (MQ=255)      aGCGTATTCGCCGCCTGATTGAATAGCTGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGccc                                                                                                                                                   <  3:10325/149‑1 (MQ=255)               gccgccTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑Ga                                                                                                                                          <  5:45772/148‑1 (MQ=255)                       aTTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCAtt                                                                                                                                  <  6:233178/148‑1 (MQ=255)                         tggcatgagccagcacttcgtgacgcgtaacgtgctggtgccggggcagtccatcgaaatgaacctcgaagaagggccgTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAAc                                                                                                                                                        <  4:52753‑M1/46‑1 (MQ=255)                         tggcatgagccagcacttcgtgacgcgtaacgtgctggtgccggggcagtccatcgaaatgaacctcgaagaagggccgTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAAc                                                                                                                                                        >  3:52753‑M1/80‑125 (MQ=255)                           aaTAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑t                                                                                                                            >  5:303310/1‑149 (MQ=255)                                  ggCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGc                                                                                                                     <  8:270624/149‑1 (MQ=255)                                     ccAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑g                                                                                                                                           <  7:227431/125‑1 (MQ=255)                                     ccAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑g                                                                                                                                           >  8:227431/1‑125 (MQ=255)                                     ccAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGtt                                                                                                                                      <  1:312630/130‑1 (MQ=255)                                     ccAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGtt                                                                                                                                      >  2:312630/1‑130 (MQ=255)                                             gcgcgcACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAg                                                                                                          <  6:303310/149‑1 (MQ=255)                                             gcgcgcACAATCGGCCCGGCATAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCa                                                                                                           <  8:12036/148‑1 (MQ=255)                                                     aaTCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTAc                                                                                                  >  1:154640/1‑149 (MQ=255)                                                             cGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGccc                                                                                                                   <  8:199743/124‑1 (MQ=255)                                                             cGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGccc                                                                                                                   >  7:199743/1‑124 (MQ=255)                                                             cGGCGAAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCATGAACACACAAACAACATGCAGCTGGGTGAACGGCCCTTATTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCAc                                                                                           >  5:241089/1‑148 (MQ=255)                                                                                gTCCAGGCTGATCTTGAAGGCTTTTTCCCCCAGCGGCTTGAACACACAAACAACATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGAGCTGGCTCATGcccc                                                                       >  2:229822/1‑147 (MQ=255)                                                                                     ggCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GTGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATTCCACCCTTg                                                                  <  3:93593/149‑1 (MQ=255)                                                                                           tCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACt                                                            >  2:192777/1‑149 (MQ=255)                                                                                               gCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACtt                                                           <  1:192777/146‑1 (MQ=255)                                                                                               gCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTc                                                          <  5:124688/147‑1 (MQ=255)                                                                                                       gttcacccagctgcatggtgtttgggtgttcaagccgctgggtgaaCGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCa                                                                        <  4:52753‑M2/79‑1 (MQ=255)                                                                                                       gttcacccagctgcatggtgtttgggtgttcaagccgctgggtgaaCGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCa                                                                        >  3:52753‑M2/47‑125 (MQ=255)                                                                                                       gttcacccagctgcatggtgtttgggtgttcaagccgctgggtgaaCGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCTCCCTTGGCCACTTCGAGCTTGGCa                                                >  3:167336‑M2/47‑149 (MQ=255)                                                                                                           acccagctgcatggtgtttgggtgttcaagccgctgggtgaaCGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCa                                            >  6:132547‑M2/43‑149 (MQ=255)                                                                                                           ACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGCGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCa                                            <  8:230404‑M1/149‑1 (MQ=255)                                                                                                            cccagctgcatggtgtttgggtgttcaagccgctgggtgaaCGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCAt                                           <  5:132547‑M2/108‑1 (MQ=255)                                                                                                                    cTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCAtgt                                         <  7:219542/143‑1 (MQ=255)                                                                                                                    cTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCAtgt                                         >  8:219542/1‑143 (MQ=255)                                                                                                                      tGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCg                                 >  3:111484/1‑149 (MQ=255)                                                                                                                           acCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGt                            >  2:174946/1‑149 (MQ=255)                                                                                                                             ccAAACACCATGCAGCTGTGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGATTGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGtt                           >  1:85806/1‑149 (MQ=255)                                                                                                                             ccAAACACCATGCAGCTGGGTGAACGGCCCTTCTTCAGAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGATCATGCCACCCATGGCCACTACGAGCTTGGCCAGCATGTGTGTATCGCTGGtt                           >  1:230657/1‑149 (MQ=255)                                                                                                                             ccAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGttt                          >  3:101086/1‑149 (MQ=255)                                                                                                                             ccAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGttt                          >  4:6903/1‑149 (MQ=255)                                                                                                                              cAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑CGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTc                         >  7:262377/1‑149 (MQ=255)                                                                                                                                 tgttcaagccgctgggtgaaCGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCTCCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGAt                      <  4:167336‑M2/129‑1 (MQ=255)                                                                                                                                  cacCCTGCAGCTGGGGGACCGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATc                     <  4:101086/149‑1 (MQ=255)                                                                                                                                  cacCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATc                     <  1:174946/149‑1 (MQ=255)                                                                                                                                   acCTTGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCt                                                     <  4:104812/116‑1 (MQ=255)                                                                                                                                   acCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCt                                                     <  6:37348/116‑1 (MQ=255)                                                                                                                                   acCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCt                                                     >  3:104812/1‑116 (MQ=255)                                                                                                                                   acCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCt                                                     >  5:37348/1‑116 (MQ=255)                                                                                                                                     gaTGCAGCTGGTTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TCGACTGCCCCGGCACCAGCACGTTACTCGGCACGAAGTGCTTGCTCATGCATCCCTTTGCCACTTCTAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATCAcc                  <  2:230657/148‑1 (MQ=255)                                                                                                                                      aTGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATCACCg                 >  6:175598/1‑149 (MQ=255)                                                                                                                                      aTGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATCACCg                 >  4:154033/1‑149 (MQ=255)                                                                                                                                       tGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGACACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATCAACGt                >  7:54996/1‑149 (MQ=255)                                                                                                                                          aGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATCACCGTCGa             <  3:145997/149‑1 (MQ=255)                                                                                                                                               ggtgaaCGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATCACCGTCGAGGcc         <  3:5863‑M2/142‑1 (MQ=255)                                                                                                                                                   aaCGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCAtgtgt                                       >  7:139155‑M2/3‑114 (MQ=255)                                                                                                                                                   aaCGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCAtgtgt                                       <  8:139155‑M2/112‑1 (MQ=255)                                                                                                                                                   aaCGGCCCTTCTTC‑GAGGTTCATTTCGA‑CGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATCACCGTCGAGGCCGAGc     <  8:262377‑M2/146‑1 (MQ=255)                                                                                                                                                     cGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATCACCGTCGAGGCCGAGcacc  <  3:6903/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                       CGACCAGCGTATTCGCCGCCTGATTGAATAGCGGGCCCAACGTGGCGCGCACAATCGGCCCGGCGTAATCGAAGGACAGGTCCAGGCTGATCTTGCAGGCTTTTTCACCCAGCGGCTTGAACACCCAAACACCATGCAGCTGGGTGAACGGCCCTTCTTC‑GAGGTTCATTTCGA‑TGGACTGCCCCGGCACCAGCACGTTACGCGTCACGAAGTGCTGGCTCATGCCACCCTTGGCCACTTCGAGCTTGGCACGCATGTGTGTATCGCTGGTTTCGATCACCGTCGAGGCCGAGCACC  >  NC_002947/5381338‑5381634

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.