New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5526980	49 (0.910)	3 (0.060)	3/246	NT	5.5%	coding (493/1134 nt)	PP_4860	mannose‑6‑phosphate isomerase
	?	NC_002947	= 5527008	56 (1.090)					coding (521/1134 nt)	PP_4860	mannose‑6‑phosphate isomerase

GACGCCCAAGGCAAGCCGCTGGACCGGCGCAAGGACCTGTATACCCACGCCTTCATCGTGTTCGCCTGCGCGCACTACTGGGGCAAAGTGCGCGAAAACCTGGTGGAGTCCACGTTGAATGCCGCGCTGGACATCATCGACCAGCAGTTCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5526827‑5526980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcccAGGCAGGCTTCGTACAGGCCATCGTCACGGGCGAACTGCTGGTCGATGATGTCCAGCGCGGCATTCAACGTGGACTCCACCAGGTTTTCGCGCACTTTGCCCCAGTAGTGCGCGCAGGCGAACACGATGAAGGCGTGGGTATACAG  <  NC_002947/5527008‑5526863                                                                                                                                                                                                                                                                                                              GACGCCCAAGGCAAGCCGCTGGACCGGCGCAAGGACCTGTATACCCACGCCTTCATCGTGTTCGCCTGCGCGCACTACTGGGGCAAAGTGCGCGAAAACCTGGTGGAGTCCACGTTGAATGCCGCGCTGGACATCATCGACCAGCAGTT                                                                                                                                                         <  5:45283/149‑1      CCAAGGCAAGCCGCTGGACCGGCGCAAGGACCTGTATACCCACGCCTTCATCGTGTTCGCCTGCGCGCACTACTGGGGCAAAGTGCGCGAAAACCTGGTGGAGTCCACGTTGAATGCCGCGCTGGACATCATCGACCAGCAGTTCGCCC                                                                                                                                                    >  2:225746/1‑149                                          TACCCACGCCTTCATCGTGTTCGCCTGCGCGCACTACTGGGGCAAAGTGCGCGAAAACCTGGTGGAGTCCACGTTGAATGCCGCGCTGGACATCATCGACCAGCAGTTCGCCCAGGCAGGCTTCGTACAGGCCATCGTCACGGGCGAA                                                                                                                 <  5:154179/148‑1                                             CCACGCCTTCATCGTGTTCGCCTGCGCGCACTACTGGGGCAAAGTGCGCGAAAACCTGGTGGAGTCCACGTTGAATGCCGCGCTGGACATCATCGACCAGCAGTTCGCCCAGGCAGGCTTCGTACAGGCCATCGTCACGGG                                                                                                                     >  5:351709/1‑141                                             CCACGCCTTCATCGTGTTCGCCTGCGCGCACTACTGGGGCAAAGTGCGCGAAAACCTGGTGGAGTCCACGTTGAATGCCGCGCTGGACATCATCGACCAGCAGTTCGCCCAGGCAGGCTTCGTACAGGCCATCGTCACGGG                                                                                                                     <  6:351709/141‑1                                                                                                                                                    TTCGCCCAGGCAGGCTTCGTACAGGCCATCGTCACGGGCGAACTGCTGGTCGATGATGTCCAGCGCGGCATTCAACGTGGACTCCACCAGGTTTTCGCGCACTTTGCCCCAGTAGTGCGCGCAGGCGAACACGATGAAGGCGTGGGTA       >  7:280698/1‑148                                                                                                                                                       GCCCAGGCAGGCTTCGTACAGGCCATCGTCACGGGCGAACTGCTGGTCGATGATGTCCAGCGCGGCATTCAACGTGGACTCCACCAGGTTTTCGCGCACTTTGCCCCAGTAGTGCGCGCAGGCGAACACGATGAAGGCGTGGGTATA     >  5:90705/1‑147                                                                                                                                                        CCCAGGCAGGCTTCGTACAGGCCATCGTCACGGGCGAACTGCTGGTCGATGATGTCCAGCGCGGCATTCAACGTGGACTCCACCAGGTTTTCGCGCACTTTGCCCCAGTAGTGCGCGCAGGCGAACACGATGAAGGCGTGGGTATACAG  >  1:55525/1‑149                                                                                                                                                                                                                                                                                                              GACGCCCAAGGCAAGCCGCTGGACCGGCGCAAGGACCTGTATACCCACGCCTTCATCGTGTTCGCCTGCGCGCACTACTGGGGCAAAGTGCGCGAAAACCTGGTGGAGTCCACGTTGAATGCCGCGCTGGACATCATCGACCAGCAGTTCGCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5526827‑5526980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcccAGGCAGGCTTCGTACAGGCCATCGTCACGGGCGAACTGCTGGTCGATGATGTCCAGCGCGGCATTCAACGTGGACTCCACCAGGTTTTCGCGCACTTTGCCCCAGTAGTGCGCGCAGGCGAACACGATGAAGGCGTGGGTATACAG  <  NC_002947/5527008‑5526863

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.