| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5556288 = | 56 (1.040) | 3 (0.060) | 3/246 | NT | 5.8% | coding (1342/1935 nt) | PP_4888 | methyl‑accepting chemotaxis transducer |
| ? | NC_002947 | 5556335 = | 44 (0.860) | coding (1295/1935 nt) | PP_4888 | methyl‑accepting chemotaxis transducer | |||||
GCAGCGTGACGAAGTGGCCGCCAGCCTGCGCGACCTGTCGAGCATGGCTGACGAGGCTCAGGCTGAAAGCCATGCCATGCAGGCGGCGTTGCAGCAGGTGGTGGACATTCGCCAGGCGACGGATGAGAACAGCCGTTCCTCGACGCAACTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5556442‑5556288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgaATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCGCGGCATCGGCACCGGCATTGCGCTGGGC > NC_002947/5556335‑5556480 GCAGCGTGACGAAGTGGCCGCCAGCCTGCGCGACCTGTCGAGCATGGCTGACGAGGCTCAGGCTGAAAGCCATGCCATGCAGGCGGCGTTGCAGCAGGTGGTGGACATTCGCCAGGCGACGGATGAGAACAGCCGTTCCTCGACGCAAC > 2:108056/1‑149 GTGACGAAGTGGCCGCCAGCCTGCGCGACCTGTCGAGCATGGCTGACGAGGCTCAGGCTGAAAGCCATGCCATGCAGGCGGCGTTGCAGCAGGTGGTGGACATTCGCCAGGCGACGGATGAGAACAGCCGTTCCTCGACGCAACTGGCG < 3:74055/149‑1 ACATTCGCCAGGCGACGGATGAGAACAGCCGTTCCTCGACGCAACTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAG < 7:14068/134‑1 ACATTCGCCAGGCGACGGATGAGAACAGCCGTTCCTCGACGCAACTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAG > 8:14068/1‑134 ATTCGCCAGGCGACGGATGAGAACAGCCGTTCCTCGACGCAACTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGT > 4:16940/1‑149 CGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCCCGGCATCGGCACCGGCATTGCGCTGGGC < 1:20045/149‑1 GAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCGCGGCATCGGCACCGGCATTGCGCTGGGC > 1:5949/1‑148 AATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCGCGGCATCGGCAC > 7:305182/1‑131 AATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCGCGGCATCGGCAC < 8:305182/131‑1 GCAGCGTGACGAAGTGGCCGCCAGCCTGCGCGACCTGTCGAGCATGGCTGACGAGGCTCAGGCTGAAAGCCATGCCATGCAGGCGGCGTTGCAGCAGGTGGTGGACATTCGCCAGGCGACGGATGAGAACAGCCGTTCCTCGACGCAACTGGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5556442‑5556288‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggcgaATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCGCGGCATCGGCACCGGCATTGCGCTGGGC > NC_002947/5556335‑5556480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |