New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5556288 =	56 (1.040)	3 (0.060)	3/246	NT	5.8%	coding (1342/1935 nt)	PP_4888	methyl‑accepting chemotaxis transducer
	?	NC_002947	5556335 =	44 (0.860)					coding (1295/1935 nt)	PP_4888	methyl‑accepting chemotaxis transducer

ATGACAGTCAGCACCACTTCAATCTGTTCGCTCTGCTTGGCCAGGCGCTCGATCACCTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCGCGGCATCGGCACCGGCATTGCGCTGGGC  >  NC_002947/5556188‑5556480                                                                                                                                                    |                                                                                                                                                  acgaagtggccgccagcctgcgcgacctgtcgagcatggctgacgaggctcaggctgaaagccatgccatgcaggcggcgttgcagcaggtggtggacatTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAAt                                                                                                                                                  >  4:16940‑M1/101‑149 (MQ=255)   gACAGTCAGCACCACTTCAATCTGTTCGCTCTGCTTGGCCAGGCGCTCGATCACCTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGt                                                                                                                                                >  1:294553/1‑149 (MQ=255)     cAGTCAGCACCACTTCAATCTGTTCGCTCTGCTTGGCCAGGCGCTCGATCACCTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTcc                                                                                                                                              <  4:115520/149‑1 (MQ=255)      aGTCAGCACCACTTCAATCTGTTCGCTCTGCTTGGCCAGGCGCTCGATCACCTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTcca                                                                                                                                             >  3:297102/1‑149 (MQ=255)              ccacTTCAATCTGTTCGCTCTGCTTGGCCAGGCGCTCGATCACCTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACctgc                                                                                                                                     >  2:212473/1‑149 (MQ=255)                  ctgcgcgacctgtcgagcatggctgacgaggctcaggctgaaagccatgccatgcaggcggcgttgcagcaggtggtggacatTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGt                                                                                                                                                >  8:14068‑M1/84‑134 (MQ=255)                  ctgcgcgacctgtcgagcatggctgacgaggctcaggctgaaagccatgccatgcaggcggcgttgcagcaggtggtggacatTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGt                                                                                                                                                <  7:14068‑M1/51‑1 (MQ=255)                      aTCTGTTCGCTCTGCTTGGCCAGGCGCTCGATCACCTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAAcgc                                                                                                                             <  2:294553/149‑1 (MQ=255)                               ctctGCTTGGCCAGGCGCTCGATCACCTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAGTCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCAGCACCTGCTGCAACGCCGCCTgcct                                                                                                                    >  8:95545/1‑147 (MQ=255)                                   gCTTGGCCAGGCGCTCGATCACCTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTgcatggca                                                                                                                >  5:185121/1‑149 (MQ=255)                                    cTTGGCCAGGCGCTCGATCACCTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTgcatggca                                                                                                                <  5:252980/148‑1 (MQ=255)                                          cAGGCGCTCGATCACCTGAGAGCTCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCttt                                                                                                         >  8:32883/1‑149 (MQ=255)                                            ggCGCTCGATCACCTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCa                                                                                                       <  6:126103/149‑1 (MQ=255)                                             gcgcTCGATCACCTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGAAAAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAg                                                                                                      >  1:108056/1‑149 (MQ=255)                                                         cTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACctgct                                                                                                                                    <  2:228468/107‑1 (MQ=255)                                                         cTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACctgct                                                                                                                                    >  1:228468/1‑107 (MQ=255)                                                         cTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGt                                                                                          >  3:55752/1‑149 (MQ=255)                                                         cTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGt                                                                                          >  7:325068/1‑149 (MQ=255)                                                            agagCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCa                                                                                        <  6:256762/148‑1 (MQ=255)                                                            agagCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAg                                                                                       <  6:164426/149‑1 (MQ=255)                                                              agCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGcc                                                                                     <  8:325068/149‑1 (MQ=255)                                                                cccGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCAt                                                                                   >  1:253023/1‑149 (MQ=255)                                                                     ttCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTc                                                                               >  8:184578/1‑148 (MQ=255)                                                                        aaCCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGAc                                                                            <  6:185121/148‑1 (MQ=255)                                                                         aCCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAg                                                                          >  3:69561/1‑149 (MQ=255)                                                                         aCCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAg                                                                          <  4:297102/149‑1 (MQ=255)                                                                              cccGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTcgc                                                                     >  3:59828/1‑149 (MQ=255)                                                                               ccGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGAc                                                                            >  6:171903/1‑141 (MQ=255)                                                                               ccGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGAc                                                                            <  5:171903/141‑1 (MQ=255)                                                                                 ggCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTcgcg                                                                    >  2:20045/1‑147 (MQ=255)                                                                                 ggCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACACCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCCGCCATGCTCGACAGGTcgcg                                                                    >  8:49728/1‑147 (MQ=255)                                                                                     aGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCt                                                              <  2:253023/149‑1 (MQ=255)                                                                                         tctcAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTggcg                                                          >  5:8352/1‑149 (MQ=255)                                                                                          ctcAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATg                                                                                  >  1:63095/1‑124 (MQ=255)                                                                                          ctcAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATg                                                                                  <  2:63095/124‑1 (MQ=255)                                                                                                 acattcgccaggcgacggatgagaacagccgttcctcgacgcaactggcgaATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAg                                                                 >  8:14068‑M2/52‑134 (MQ=255)                                                                                                 acattcgccaggcgacggatgagaacagccgttcctcgacgcaactggcgaATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAg                                                                 <  7:14068‑M2/83‑1 (MQ=255)                                                                                                 aGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACtt                                                   <  4:69561/148‑1 (MQ=255)                                                                                                   attcgccaggcgacggatgagaacagccgttcctcgacgcaactggcgaATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGt                                                >  4:16940‑M2/50‑149 (MQ=255)                                                                                                      CGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCAc                                             <  3:74055‑M1/149‑1 (MQ=255)                                                                                                           GTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGc                                        >  2:108056‑M1/1‑149 (MQ=255)                                                                                                                 tCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAAcgcc                                  <  6:8352/149‑1 (MQ=255)                                                                                                                   gAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAAcgccgc                                >  2:201175/1‑149 (MQ=255)                                                                                                                      gAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAAcgccgccgc                             <  7:32883/149‑1 (MQ=255)                                                                                                                           gCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCGCGGCAt                        >  8:254865/1‑149 (MQ=255)                                                                                                                                  tcATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCa                                              <  4:266488/120‑1 (MQ=255)                                                                                                                                  tcATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCa                                              >  3:266488/1‑120 (MQ=255)                                                                                                                                  tcATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCGCGGCATCGGCAcc                 >  4:210913/1‑149 (MQ=255)                                                                                                                                    atacGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCcgcg                            >  7:36949/4‑136 (MQ=255)                                                                                                                                    aTCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCcgcg                            <  8:36949/136‑1 (MQ=255)                                                                                                                                      ccGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCgcgc                                                                   >  6:34876/1‑95 (MQ=255)                                                                                                                                      ccGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCgcgc                                                                   <  5:34876/95‑1 (MQ=255)                                                                                                                                      ccGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATCCTCGACACGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCGCGCCATCGGCACCGGCa             >  3:318678/1‑149 (MQ=255)                                                                                                                                            ccTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCGCGGCATCGGCACCGGCATTgcgc       >  7:9974/1‑149 (MQ=255)                                                                                                                                                 cgaATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCCCGGCATCGGCACCGGCATTGCGCTGGGc  <  1:20045‑M2/146‑1 (MQ=255)                                                                                                                                                  gaATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCGCGGCATCGGCACCGGCATTGCGCTGGGc  >  1:5949‑M2/3‑148 (MQ=255)                                                                                                                                                   aATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCGCGGCATCGGCAc                  <  8:305182‑M2/130‑1 (MQ=255)                                                                                                                                                   aATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCGCGGCATCGGCAc                  >  7:305182‑M2/2‑131 (MQ=255)                                                                                                                                                    |                                                                                                                                                  ATGACAGTCAGCACCACTTCAATCTGTTCGCTCTGCTTGGCCAGGCGCTCGATCACCTGAGAGCCCGTTTCAACCTGCCCGGCAAGGTTCTCAATCAGGCTCGCCAGTTGCGTCGAGGAACGGCTGTTCTCATCCGTCGCCTGGCGAATGTCCACCACCTGCTGCAACGCCGCCTGCATGGCATGGCTTTCAGCCTGAGCCTCGTCAGCCATGCTCGACAGGTCGCGCAGGCTGGCGGCCACTTCGTCACGCTGCAACGCCGCCGCGGCATCGGCACCGGCATTGCGCTGGGC  >  NC_002947/5556188‑5556480

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.